Ss1.1-rpigcb_0215.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAATATGATTCCTCCCAGAGGTTGTGCCTATATTGTTATGGTTCATAGGCAAGATGCTTA TCGTGCCCTGCAGAAACTGAGCCGAGGAAACTATAAAGTGAACCAGAAATCCATAAAGAT TGCCTGGGCCTTAAACAAAGGAATAAAGGCAGATTATAAGCAGTATTGGGATGTAGAACT TGGTGTGACTTACATTCCATGGGACAAAGTCAAGCCTGAAGAACTGGAAAGTTTTTGTGA AGGAGGAATGTTGGACAGCGACACACTTAATCCAGATTGGAAGGGAATTCCCAAAAAGCA TGAAAATGAAGTTGCTCAAAATGGAGGGGCAGAAACCTCACACACAGAACCAGTATCACC CATACCTAAGCCTTTACCTGTACCTGTCCCTCCTATCCCTGTGCCTGCACCTATAACAGT ACCACCTCCACAGGTCCCACCACATCAGCCGGGACCTCCTGTAGTTGGTGCTCTCCAGCC ACCCACTTTCACGCCTCCTTTAGGAATTCCGCCTCCAGGCTTTGGTCCTGGTGTTCCTCC TCCTCCACCTCCTCCGCCATTTTTGCGCCCAGGATTCAACCCAATGCATTTACCACCAGG TTTTCTTCCTCCTGGACCCCCACCTCCTATAACTCCACCAGTATCCATTCCTCCTCCTCA CACTCCACCAATAAGCATCCCAAACTTGGTGTCTGGGGCTAGAGGAAACGCCGAGTCTGG TGACAGTGTGAAAATGTATGGCTCTGCCGTGCCACCTGCTGCACCCACGAATCTGCCTAC CCCTCCTGTAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAATATGATTCCTCCCAGAGGTTGTGCCTATATTGTTATGGTTCATAGGCAAGATGCTTA TCGTGCCCTGCAGAAACTGAGCCGAGGAAACTATAAAGTGAACCAGAAATCCATAAAGAT TGCCTGGGCCTTAAACAAAGGAATAAAGGCAGATTATAAGCAGTATTGGGATGTAGAACT TGGTGTGACTTACATTCCATGGGACAAAGTCAAGCCTGAAGAACTGGAAAGTTTTTGTGA AGGAGGAATGTTGGACAGCGACACACTTAATCCAGATTGGAAGGGAATTCCCAAAAAGCA TGAAAATGAAGTTGCTCAAAATGGAGGGGCAGAAACCTCACACACAGAACCAGTATCACC CATACCTAAGCCTTTACCTGTACCTGTCCCTCCTATCCCTGTGCCTGCACCTATAACAGT ACCACCTCCACAGGTCCCACCACATCAGCCGGGACCTCCTGTAGTTGGTGCTCTCCAGCC ACCCACTTTCACGCCTCCTTTAGGAATTCCGCCTCCAGGCTTTGGTCCTGGTGTTCCTCC TCCTCCACCTCCTCCGCCATTTTTGCGCCCAGGATTCAACCCAATGCATTTACCACCAGG TTTTCTTCCTCCTGGACCCCCACCTCCTATAACTCCACCAGTATCCATTCCTCCTCCTCA CACTCCACCAATAAGCATCCCAAACTTGGTGTCTGGGGCTAGAGGAAACGCCGAGTCTGG TGACAGTGTGAAAATGTATGGCTCTGCCGTGCCACCTGCTGCACCCACGAATCTGCCTAC CCCTCCTGTAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 432-551, + strand, RNAz p=0.819132 | |
| 432-551, - strand, RNAz p=0.819132 | |
| 432-601, + strand, RNAz p=0.990351 | |
| 432-601, - strand, RNAz p=0.990351 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 432-551, + strand, RNAz p=0.819132 | |
| 432-551, - strand, RNAz p=0.819132 | |
| 432-601, + strand, RNAz p=0.990351 | |
| 432-601, - strand, RNAz p=0.990351 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 114-282, gnl|bosTau2|chr9 (54309493-54309325) | |
| 114-282, gnl|canFam2|chr1 (47669532-47669703) | |
| 114-282, gnl|danRer3|chrNA (34462749-34462586) | |
| 114-282, gnl|dasNov1|scaffold_14277 (9979-10155) | |
| 114-282, gnl|echTel1|scaffold_212675 (5190-5353) | |
| 114-282, gnl|fr1|chrUn (120069704-120069873) | |
| 114-282, gnl|galGal2|chr3 (49300264-49300432) | |
| 114-282, gnl|hg17|chr6 (155233413-155233584) | |
| 114-282, gnl|Hg17|chr6 (155233414-155233587) | |
| 114-282, gnl|loxAfr1|scaffold_5893 (51460-51289) | |
| 114-282, gnl|mm7|chr17 (3187579-3187750) | |
| 114-282, gnl|Mm7|chr17 (3187577-3187753) | |
| 114-282, gnl|monDom2|scaffold_0 (49955134-49954971) | |
| 114-282, gnl|oryCun1|scaffold_201260 (147672-147848) | |
| 114-282, gnl|panTro1|chr5 (158791381-158791552) | |
| 114-282, gnl|rheMac2|chr4 (108151740-108151569) | |
| 114-282, gnl|rn3|chr1 (38165916-38166087) | |
| 114-282, gnl|tetNig1|chr10 (2672687-2672511) | |
| 114-282, gnl|xenTro1|scaffold_124 (681236-681065) | |
| 117-275, gnl|bosTau2|chr1 (2852864-2852706) | |
| 117-275, gnl|Hg17|chr21 (31985139-31984981) | |
| 117-275, gnl|Mm7|chr16 (90295466-90295308) | |
| 432-601, gnl|bosTau2|chr1 (2850120-2849951) | |
| 432-601, gnl|canFam2|chr31 (29581402-29581604) | |
| 432-601, gnl|danRer3|chr10 (17469695-17469498) | |
| 432-601, gnl|dasNov1|scaffold_14277 (13960-13756) | |
| 432-601, gnl|echTel1|scaffold_298931 (2801-2606) | |
| 432-601, gnl|fr1|chrUn (133393601-133393753) | |
| 432-601, gnl|galGal2|chr1 (98421371-98421583) | |
| 432-601, gnl|hg17|chr21 (31979740-31979941) | |
| 432-601, gnl|Hg17|chr21 (31979919-31979750) | |
| 432-601, gnl|loxAfr1|scaffold_34777 (6097-6292) | |
| 432-601, gnl|mm7|chr16 (90292959-90293152) | |
| 432-601, gnl|Mm7|chr16 (90293138-90292969) | |
| 432-601, gnl|monDom2|scaffold_29 (10728834-10728634) | |
| 432-601, gnl|oryCun1|scaffold_201260 (151642-151436) | |
| 432-601, gnl|panTro1|chr22 (31955013-31955214) | |
| 432-601, gnl|rheMac2|chr3 (14823265-14823064) | |
| 432-601, gnl|rn3|chr11 (29793666-29793472) | |
| 432-601, gnl|tetNig1|chr7 (2978196-2978056) | |
| 432-601, gnl|xenTro1|scaffold_390 (494996-495179) | |
| 676-792, gnl|bosTau2|chr1 (2849567-2849451) | |
| 676-792, gnl|Hg17|chr21 (31979369-31979253) | |
| 676-792, gnl|Mm7|chr16 (90292590-90292474) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 114-282, gnl|bosTau2|chr9 (54309493-54309325) | |
| 114-282, gnl|canFam2|chr1 (47669532-47669703) | |
| 114-282, gnl|danRer3|chrNA (34462749-34462586) | |
| 114-282, gnl|dasNov1|scaffold_14277 (9979-10155) | |
| 114-282, gnl|echTel1|scaffold_212675 (5190-5353) | |
| 114-282, gnl|fr1|chrUn (120069704-120069873) | |
| 114-282, gnl|galGal2|chr3 (49300264-49300432) | |
| 114-282, gnl|hg17|chr6 (155233413-155233584) | |
| 114-282, gnl|Hg17|chr6 (155233414-155233587) | |
| 114-282, gnl|loxAfr1|scaffold_5893 (51460-51289) | |
| 114-282, gnl|mm7|chr17 (3187579-3187750) | |
| 114-282, gnl|Mm7|chr17 (3187577-3187753) | |
| 114-282, gnl|monDom2|scaffold_0 (49955134-49954971) | |
| 114-282, gnl|oryCun1|scaffold_201260 (147672-147848) | |
| 114-282, gnl|panTro1|chr5 (158791381-158791552) | |
| 114-282, gnl|rheMac2|chr4 (108151740-108151569) | |
| 114-282, gnl|rn3|chr1 (38165916-38166087) | |
| 114-282, gnl|tetNig1|chr10 (2672687-2672511) | |
| 114-282, gnl|xenTro1|scaffold_124 (681236-681065) | |
| 117-275, gnl|bosTau2|chr1 (2852864-2852706) | |
| 117-275, gnl|Hg17|chr21 (31985139-31984981) | |
| 117-275, gnl|Mm7|chr16 (90295466-90295308) | |
| 432-601, gnl|bosTau2|chr1 (2850120-2849951) | |
| 432-601, gnl|canFam2|chr31 (29581402-29581604) | |
| 432-601, gnl|danRer3|chr10 (17469695-17469498) | |
| 432-601, gnl|dasNov1|scaffold_14277 (13960-13756) | |
| 432-601, gnl|echTel1|scaffold_298931 (2801-2606) | |
| 432-601, gnl|fr1|chrUn (133393601-133393753) | |
| 432-601, gnl|galGal2|chr1 (98421371-98421583) | |
| 432-601, gnl|hg17|chr21 (31979740-31979941) | |
| 432-601, gnl|Hg17|chr21 (31979919-31979750) | |
| 432-601, gnl|loxAfr1|scaffold_34777 (6097-6292) | |
| 432-601, gnl|mm7|chr16 (90292959-90293152) | |
| 432-601, gnl|Mm7|chr16 (90293138-90292969) | |
| 432-601, gnl|monDom2|scaffold_29 (10728834-10728634) | |
| 432-601, gnl|oryCun1|scaffold_201260 (151642-151436) | |
| 432-601, gnl|panTro1|chr22 (31955013-31955214) | |
| 432-601, gnl|rheMac2|chr3 (14823265-14823064) | |
| 432-601, gnl|rn3|chr11 (29793666-29793472) | |
| 432-601, gnl|tetNig1|chr7 (2978196-2978056) | |
| 432-601, gnl|xenTro1|scaffold_390 (494996-495179) | |
| 676-792, gnl|bosTau2|chr1 (2849567-2849451) | |
| 676-792, gnl|Hg17|chr21 (31979369-31979253) | |
| 676-792, gnl|Mm7|chr16 (90292590-90292474) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |