Non-Coding RNA Search

Ss1.1-rpigcb_0342.5

Sequence:


               
               AGCTGTGAGGCCCAGGTGTAGCCGAAGAAGTGGCCGCGGAGCCGCCGTCTGCGGGAGTGG
GGTCTGGTGTTGCAGCGCCGGCGCTTGCCAGGCTCAGATGAGGATCCACGCTGCTAAGAA
GCCTGTCAGATGGTGGTGTGGGATATGAATGCAGCAGCCAACAGTGGAGCCAGACAGGAG
GCAAGAGGTGCCACTTAGGCTGGCACTAAAAGGCATTTATAGTGGATGGACTGAACAGTC
TCTGTAAATATCCTCTCAGATTTTGGCTATTTCTGATGCTTGGAAGCTATCCTTTCAGCC
ATAAAGATGGTAATAAACCTTTGCCTCCCACAGTTCAAACCAAGAATTTACTGCAACAAG
ATATCAGCCGATGGTTATGAAGTAGAAAATCTCATCTCTGAAGACCTCATAAAGAGAAGT
CATGGTTTTAGGACAGAGTATTTCATTAAGCCACCAGTCTATGCGACAGTTTCCTTTCCC
TTCAGTGTAGAAATCTGTAGGATTAACATAGACCTCCCCGCTGGGGGAGGCCAGAATGTC
ACCGGCCTGGAAATGTACACATCTGCCTTATCCAGCAGAGCGTCTTGGAGTACCCCCGAC
TGCCGGACCCCAGGCCCAGCCGAGCCATCCATCCCGGGCAAGGAAGCGTTCACCTTGGTG
GGCAAAGTCTTGTTGAAAAACCAGAGCCAAGTGGTATTTAGCCACAGGGGCTTCAAGGCC
AGGCCACCTTTTAGCCCGATGGAAGCCACACTCCCGTCCCCTGCTGTCGTGGCCCAGGAG
CTGTGGAATAAAGGGGCTCTTTCTCTTAGTCATGTGGCCCATGTCAAGATCTGTATCACC
CATGTGACAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGTGAGGCCCAGGTGTAGCCGAAGAAGTGGCCGCGGAGCCGCCGTCTGCGGGAGTGG
GGTCTGGTGTTGCAGCGCCGGCGCTTGCCAGGCTCAGATGAGGATCCACGCTGCTAAGAA
GCCTGTCAGATGGTGGTGTGGGATATGAATGCAGCAGCCAACAGTGGAGCCAGACAGGAG
GCAAGAGGTGCCACTTAGGCTGGCACTAAAAGGCATTTATAGTGGATGGACTGAACAGTC
TCTGTAAATATCCTCTCAGATTTTGGCTATTTCTGATGCTTGGAAGCTATCCTTTCAGCC
ATAAAGATGGTAATAAACCTTTGCCTCCCACAGTTCAAACCAAGAATTTACTGCAACAAG
ATATCAGCCGATGGTTATGAAGTAGAAAATCTCATCTCTGAAGACCTCATAAAGAGAAGT
CATGGTTTTAGGACAGAGTATTTCATTAAGCCACCAGTCTATGCGACAGTTTCCTTTCCC
TTCAGTGTAGAAATCTGTAGGATTAACATAGACCTCCCCGCTGGGGGAGGCCAGAATGTC
ACCGGCCTGGAAATGTACACATCTGCCTTATCCAGCAGAGCGTCTTGGAGTACCCCCGAC
TGCCGGACCCCAGGCCCAGCCGAGCCATCCATCCCGGGCAAGGAAGCGTTCACCTTGGTG
GGCAAAGTCTTGTTGAAAAACCAGAGCCAAGTGGTATTTAGCCACAGGGGCTTCAAGGCC
AGGCCACCTTTTAGCCCGATGGAAGCCACACTCCCGTCCCCTGCTGTCGTGGCCCAGGAG
CTGTGGAATAAAGGGGCTCTTTCTCTTAGTCATGTGGCCCATGTCAAGATCTGTATCACC
CATGTGACAGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               439-758, - strand, RNAz p=0.868546

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               439-758, - strand, RNAz p=0.868546

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               395-491, - strand, RNAmicro p=0.979576

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               395-491, - strand, RNAmicro p=0.979576

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               95-262, gnl|bosTau2|chr13 (34511260-34511093)
               

               
               95-262, gnl|Hg17|chr20 (3058002-3057833)
               

               
               95-262, gnl|Mm7|chr2 (130345482-130345339)
               


               
               359-851, gnl|bosTau2|chr13 (34499914-34499422)
               

               
               359-851, gnl|canFam2|chr24 (21156940-21156543)
               

               
               359-851, gnl|echTel1|scaffold_292610 (45742-45336)
               

               
               359-851, gnl|fr1|chrUn (46257000-46257472)
               

               
               359-851, gnl|galGal2|chr4 (88705627-88706024)
               

               
               359-851, gnl|hg17|chr20 (3050707-3051104)
               

               
               359-851, gnl|Hg17|chr20 (3051232-3050740)
               

               
               359-851, gnl|loxAfr1|scaffold_40060 (5754-5357)
               

               
               359-851, gnl|mm7|chr2 (130341041-130341438)
               

               
               359-851, gnl|Mm7|chr2 (130341566-130341074)
               

               
               359-851, gnl|monDom2|scaffold_10 (49041233-49041627)
               

               
               359-851, gnl|oryCun1|scaffold_87980 (3953-4348)
               

               
               359-851, gnl|panTro1|chr21 (3030065-3030462)
               

               
               359-851, gnl|rheMac2|chr10 (36427611-36428008)
               

               
               359-851, gnl|rn3|chr3 (118132986-118133383)
               

               
               359-851, gnl|xenTro1|scaffold_366 (815221-814833)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-262, gnl|bosTau2|chr13 (34511260-34511093)
               

               
               95-262, gnl|Hg17|chr20 (3058002-3057833)
               

               
               95-262, gnl|Mm7|chr2 (130345482-130345339)
               


               
               359-851, gnl|bosTau2|chr13 (34499914-34499422)
               

               
               359-851, gnl|canFam2|chr24 (21156940-21156543)
               

               
               359-851, gnl|echTel1|scaffold_292610 (45742-45336)
               

               
               359-851, gnl|fr1|chrUn (46257000-46257472)
               

               
               359-851, gnl|galGal2|chr4 (88705627-88706024)
               

               
               359-851, gnl|hg17|chr20 (3050707-3051104)
               

               
               359-851, gnl|Hg17|chr20 (3051232-3050740)
               

               
               359-851, gnl|loxAfr1|scaffold_40060 (5754-5357)
               

               
               359-851, gnl|mm7|chr2 (130341041-130341438)
               

               
               359-851, gnl|Mm7|chr2 (130341566-130341074)
               

               
               359-851, gnl|monDom2|scaffold_10 (49041233-49041627)
               

               
               359-851, gnl|oryCun1|scaffold_87980 (3953-4348)
               

               
               359-851, gnl|panTro1|chr21 (3030065-3030462)
               

               
               359-851, gnl|rheMac2|chr10 (36427611-36428008)
               

               
               359-851, gnl|rn3|chr3 (118132986-118133383)
               

               
               359-851, gnl|xenTro1|scaffold_366 (815221-814833)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.20816)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)

	95-262, gnl\|bosTau2\|chr13 (34511260-34511093)
	95-262, gnl\|Hg17\|chr20 (3058002-3057833)
	95-262, gnl\|Mm7\|chr2 (130345482-130345339)

	359-851, gnl\|bosTau2\|chr13 (34499914-34499422)
	359-851, gnl\|canFam2\|chr24 (21156940-21156543)
	359-851, gnl\|echTel1\|scaffold_292610 (45742-45336)
	359-851, gnl\|fr1\|chrUn (46257000-46257472)
	359-851, gnl\|galGal2\|chr4 (88705627-88706024)
	359-851, gnl\|hg17\|chr20 (3050707-3051104)
	359-851, gnl\|Hg17\|chr20 (3051232-3050740)
	359-851, gnl\|loxAfr1\|scaffold_40060 (5754-5357)
	359-851, gnl\|mm7\|chr2 (130341041-130341438)
	359-851, gnl\|Mm7\|chr2 (130341566-130341074)
	359-851, gnl\|monDom2\|scaffold_10 (49041233-49041627)
	359-851, gnl\|oryCun1\|scaffold_87980 (3953-4348)
	359-851, gnl\|panTro1\|chr21 (3030065-3030462)
	359-851, gnl\|rheMac2\|chr10 (36427611-36428008)
	359-851, gnl\|rn3\|chr3 (118132986-118133383)
	359-851, gnl\|xenTro1\|scaffold_366 (815221-814833)