Non-Coding RNA Search

Ss1.1-rpigcb_0350.5

Sequence:


               
               CTGATGCTCCTCAGCGAGATTGCGGACCCGACGCGTTTTTTCACCGACAACTTGCTGAGC
CCGGAGGACTGGGACAGCACCTTGTACGCCGGCCTGGATGAAGTGGCCGAGGAGCCGACG
CAGCTTTTCCGTTGCCCGGAGGAAGATGTCCCGTTTGGCAGCAGCTCCCTGGACTTGGGG
ATGGATGTCAGCCCTCCCGAACCCCCCTGGGACCCTCTGCCTATCTTCCCAGATCTTCAG
GTGAAGTCTGAGCCATCCTCCCCCTGCTCTTCCTCCTCCCTCAGCTCTGAAGCATCACAT
CTTTCCACAGAGCCCTCCAGCCAGGCTTCTGGTGTAGGGGAGGTGCTGGTTGTGAAGACA
GAGTCCTTGGCGCCCCCACTCTGCCTTCTGGGAGATGATCCAACATCCCCTTTTGAAACC
GTCCAGATCAATGTGGGCCCCACCTCTGATGATCCCTCAGATGTCCAAATTAAGATAGAG
CCTGTCTCTCCATCTTCCTCCATCAACTCGGAGGCGTCTGTGCTCTCAGCAGAGTCCCCC
AACCAGACCTTTATAGGGGAGGAAGTATTAGAAGTGAAGACAGAGTCCCCGTCCCCTCAA
GGGTGTCTCCTGCGGGATGTCCCAGGCCCCGCACTTGGAGCTGTCCAGATCACCATGGGC
CCGTCCTCCGATGGCTCCTCAGGCAAAGCTCTGCCCACTCGGAAGCCACCGCTGCAACCC
AAACCTGTGGTGATAACCACTGTCCCAATGCCACCCAGAGCTGTGCCTCCCAGCACCACT
GTCCTTTTGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGATGCTCCTCAGCGAGATTGCGGACCCGACGCGTTTTTTCACCGACAACTTGCTGAGC
CCGGAGGACTGGGACAGCACCTTGTACGCCGGCCTGGATGAAGTGGCCGAGGAGCCGACG
CAGCTTTTCCGTTGCCCGGAGGAAGATGTCCCGTTTGGCAGCAGCTCCCTGGACTTGGGG
ATGGATGTCAGCCCTCCCGAACCCCCCTGGGACCCTCTGCCTATCTTCCCAGATCTTCAG
GTGAAGTCTGAGCCATCCTCCCCCTGCTCTTCCTCCTCCCTCAGCTCTGAAGCATCACAT
CTTTCCACAGAGCCCTCCAGCCAGGCTTCTGGTGTAGGGGAGGTGCTGGTTGTGAAGACA
GAGTCCTTGGCGCCCCCACTCTGCCTTCTGGGAGATGATCCAACATCCCCTTTTGAAACC
GTCCAGATCAATGTGGGCCCCACCTCTGATGATCCCTCAGATGTCCAAATTAAGATAGAG
CCTGTCTCTCCATCTTCCTCCATCAACTCGGAGGCGTCTGTGCTCTCAGCAGAGTCCCCC
AACCAGACCTTTATAGGGGAGGAAGTATTAGAAGTGAAGACAGAGTCCCCGTCCCCTCAA
GGGTGTCTCCTGCGGGATGTCCCAGGCCCCGCACTTGGAGCTGTCCAGATCACCATGGGC
CCGTCCTCCGATGGCTCCTCAGGCAAAGCTCTGCCCACTCGGAAGCCACCGCTGCAACCC
AAACCTGTGGTGATAACCACTGTCCCAATGCCACCCAGAGCTGTGCCTCCCAGCACCACT
GTCCTTTTGCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55961994|emb|CAI18336.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55961994|emb|CAI18336.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               532-650, - strand, RNAz p=0.581263

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               532-650, - strand, RNAz p=0.581263

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               321-460, gnl|bosTau2|chr23 (23737870-23738009)
               

               
               321-460, gnl|Hg17|chr6 (32202011-32201872)
               

               
               321-460, gnl|Mm7|chr17 (32734481-32734618)
               


               
               532-689, gnl|bosTau2|chr23 (23741066-23741223)
               

               
               532-689, gnl|Hg17|chr6 (32196894-32196737)
               

               
               532-689, gnl|Mm7|chr17 (32735938-32736095)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               321-460, gnl|bosTau2|chr23 (23737870-23738009)
               

               
               321-460, gnl|Hg17|chr6 (32202011-32201872)
               

               
               321-460, gnl|Mm7|chr17 (32734481-32734618)
               


               
               532-689, gnl|bosTau2|chr23 (23741066-23741223)
               

               
               532-689, gnl|Hg17|chr6 (32196894-32196737)
               

               
               532-689, gnl|Mm7|chr17 (32735938-32736095)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	321-460, gnl\|bosTau2\|chr23 (23737870-23738009)
	321-460, gnl\|Hg17\|chr6 (32202011-32201872)
	321-460, gnl\|Mm7\|chr17 (32734481-32734618)

	532-689, gnl\|bosTau2\|chr23 (23741066-23741223)
	532-689, gnl\|Hg17\|chr6 (32196894-32196737)
	532-689, gnl\|Mm7\|chr17 (32735938-32736095)