Ss1.1-rpigcb_0394.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCATAAACACTTCACAGAAGACATACAGACGCGTCAGTATCGATCCATAGAGGTTTTGA TAGGAGCAGGTTACAGTACACCTGCTGACATTTGGAGTACGGCGTGTATGGCATTTGAGC TGGCAACAGGAGATTATTTGTTTGAACCGCATTCTGGGGAAGACTATTCCAGAGATGAAG ACCACATAGCCCACATCATAGAGCTGCTAGGCAGTATCCCAAGGCACTTTGCTCTATCTG GAAAATATTCTCGGGAATTCTTCAATCGCAGAGGAGAACTTCGGCACATCACCAAGCTGA AGCCCTGGAGCCTCTTTGATGTACTTGTGGAAAAGTATGGTTGGCCCCACGAAGATGCTG CACAGTTTACAGATTTCCTGATCCCAATGTTAGAAATGGTTCCAGAAAAACGAGCCTCAG CTGGCGAATGCCTTCGGCATCCTTGGTTGAATTCTTAGCAGATTCTGCAGGAGCATTCTG AGCTGGCACATGCCCAATGCATTGGCCCTACAGGGGGACTCTCGTTCTTTAACAGGATTA CAAGTGAGCTGGCTTCATCCTCAGACCTTTATTTTGCTTTGAGGTACTGTCGTTTGACAT TTTGCTTTTTGTGCACTGTGATCCTGGGGAAGGGCAGTCTTTTGTCTTCAGCTTAGTAGT TTACTGACCCACTTTCTTCTGGAAACAATAACATGTCTCTAAGCATTGTTTCTTGTGTTG TGTGACATTCAAATGTCAATTTTTTGAACGAAAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCATAAACACTTCACAGAAGACATACAGACGCGTCAGTATCGATCCATAGAGGTTTTGA TAGGAGCAGGTTACAGTACACCTGCTGACATTTGGAGTACGGCGTGTATGGCATTTGAGC TGGCAACAGGAGATTATTTGTTTGAACCGCATTCTGGGGAAGACTATTCCAGAGATGAAG ACCACATAGCCCACATCATAGAGCTGCTAGGCAGTATCCCAAGGCACTTTGCTCTATCTG GAAAATATTCTCGGGAATTCTTCAATCGCAGAGGAGAACTTCGGCACATCACCAAGCTGA AGCCCTGGAGCCTCTTTGATGTACTTGTGGAAAAGTATGGTTGGCCCCACGAAGATGCTG CACAGTTTACAGATTTCCTGATCCCAATGTTAGAAATGGTTCCAGAAAAACGAGCCTCAG CTGGCGAATGCCTTCGGCATCCTTGGTTGAATTCTTAGCAGATTCTGCAGGAGCATTCTG AGCTGGCACATGCCCAATGCATTGGCCCTACAGGGGGACTCTCGTTCTTTAACAGGATTA CAAGTGAGCTGGCTTCATCCTCAGACCTTTATTTTGCTTTGAGGTACTGTCGTTTGACAT TTTGCTTTTTGTGCACTGTGATCCTGGGGAAGGGCAGTCTTTTGTCTTCAGCTTAGTAGT TTACTGACCCACTTTCTTCTGGAAACAATAACATGTCTCTAAGCATTGTTTCTTGTGTTG TGTGACATTCAAATGTCAATTTTTTGAACGAAAAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 2-111, gnl|bosTau2|chr23 (7107270-7107379) | |
| 2-111, gnl|canFam2|chr12 (7954223-7954350) | |
| 2-111, gnl|danRer3|chr8 (16025331-16025208) | |
| 2-111, gnl|dasNov1|scaffold_212446 (286-413) | |
| 2-111, gnl|echTel1|scaffold_195958 (747-620) | |
| 2-111, gnl|fr1|chrUn (41795875-41795746) | |
| 2-111, gnl|galGal2|chr32 (948973-948849) | |
| 2-111, gnl|hg17|chr6 (35933013-35933137) | |
| 2-111, gnl|Hg17|chr6 (35933124-35933015) | |
| 2-111, gnl|loxAfr1|scaffold_100123 (7367-7494) | |
| 2-111, gnl|mm7|chr17 (26780627-26780751) | |
| 2-111, gnl|Mm7|chr17 (26780738-26780629) | |
| 2-111, gnl|monDom2|scaffold_42 (11093443-11093318) | |
| 2-111, gnl|oryCun1|scaffold_205173 (42085-41961) | |
| 2-111, gnl|panTro1|chr5 (36388322-36388446) | |
| 2-111, gnl|rheMac2|chr4 (35609613-35609737) | |
| 2-111, gnl|rn3|chr20 (6834005-6834129) | |
| 2-111, gnl|tetNig1|chr9 (3175956-3176085) | |
| 2-111, gnl|xenTro1|scaffold_19 (298219-298340) | |
| 272-457, gnl|bosTau2|chr23 (7116734-7116919) | |
| 272-457, gnl|canFam2|chr12 (7944396-7944208) | |
| 272-457, gnl|danRer3|chr11 (683171-683355) | |
| 272-457, gnl|dasNov1|scaffold_53616 (7167-7345) | |
| 272-457, gnl|echTel1|scaffold_216198 (12156-11968) | |
| 272-457, gnl|fr1|chrUn (41797554-41797738) | |
| 272-457, gnl|galGal2|chr32 (950688-950885) | |
| 272-457, gnl|hg17|chr18 (67483556-67483746) | |
| 272-457, gnl|Hg17|chr6 (35911245-35911060) | |
| 272-457, gnl|loxAfr1|scaffold_48249 (3164-3350) | |
| 272-457, gnl|Mm7|chr17 (26776703-26776518) | |
| 272-457, gnl|mm7|chrX (84142408-84142223) | |
| 272-457, gnl|monDom2|scaffold_42 (11111131-11111319) | |
| 272-457, gnl|oryCun1|scaffold_177958 (51881-51693) | |
| 272-457, gnl|panTro1|chr17_random (25639030-25638840) | |
| 272-457, gnl|rheMac2|chr18 (64421963-64421773) | |
| 272-457, gnl|rn3|chr20 (6830074-6829885) | |
| 272-457, gnl|tetNig1|chr9 (3174447-3174266) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-111, gnl|bosTau2|chr23 (7107270-7107379) | |
| 2-111, gnl|canFam2|chr12 (7954223-7954350) | |
| 2-111, gnl|danRer3|chr8 (16025331-16025208) | |
| 2-111, gnl|dasNov1|scaffold_212446 (286-413) | |
| 2-111, gnl|echTel1|scaffold_195958 (747-620) | |
| 2-111, gnl|fr1|chrUn (41795875-41795746) | |
| 2-111, gnl|galGal2|chr32 (948973-948849) | |
| 2-111, gnl|hg17|chr6 (35933013-35933137) | |
| 2-111, gnl|Hg17|chr6 (35933124-35933015) | |
| 2-111, gnl|loxAfr1|scaffold_100123 (7367-7494) | |
| 2-111, gnl|mm7|chr17 (26780627-26780751) | |
| 2-111, gnl|Mm7|chr17 (26780738-26780629) | |
| 2-111, gnl|monDom2|scaffold_42 (11093443-11093318) | |
| 2-111, gnl|oryCun1|scaffold_205173 (42085-41961) | |
| 2-111, gnl|panTro1|chr5 (36388322-36388446) | |
| 2-111, gnl|rheMac2|chr4 (35609613-35609737) | |
| 2-111, gnl|rn3|chr20 (6834005-6834129) | |
| 2-111, gnl|tetNig1|chr9 (3175956-3176085) | |
| 2-111, gnl|xenTro1|scaffold_19 (298219-298340) | |
| 272-457, gnl|bosTau2|chr23 (7116734-7116919) | |
| 272-457, gnl|canFam2|chr12 (7944396-7944208) | |
| 272-457, gnl|danRer3|chr11 (683171-683355) | |
| 272-457, gnl|dasNov1|scaffold_53616 (7167-7345) | |
| 272-457, gnl|echTel1|scaffold_216198 (12156-11968) | |
| 272-457, gnl|fr1|chrUn (41797554-41797738) | |
| 272-457, gnl|galGal2|chr32 (950688-950885) | |
| 272-457, gnl|hg17|chr18 (67483556-67483746) | |
| 272-457, gnl|Hg17|chr6 (35911245-35911060) | |
| 272-457, gnl|loxAfr1|scaffold_48249 (3164-3350) | |
| 272-457, gnl|Mm7|chr17 (26776703-26776518) | |
| 272-457, gnl|mm7|chrX (84142408-84142223) | |
| 272-457, gnl|monDom2|scaffold_42 (11111131-11111319) | |
| 272-457, gnl|oryCun1|scaffold_177958 (51881-51693) | |
| 272-457, gnl|panTro1|chr17_random (25639030-25638840) | |
| 272-457, gnl|rheMac2|chr18 (64421963-64421773) | |
| 272-457, gnl|rn3|chr20 (6830074-6829885) | |
| 272-457, gnl|tetNig1|chr9 (3174447-3174266) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cte (0.58548) | |
| cty (0.20816) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| cbl (0.114797) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| cty (0.20816) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| cbl (0.114797) |