Non-Coding RNA Search

Ss1.1-rpigcb_0407.5

Sequence:


               
               ACTACAATTCTCAACAACAGCTGTTCCAAAGACCTAACGCACTTGCTGTCCAGCAGTTGA
CAGCCGCTCAGCAACAGCAGTATGCGCTGGCAGCCGCGCATCAGCCCCACATCGGTTTAG
CTCCCGCTGCGTTTGTCCCCAATCCATACATCATCAGTGCCGCGCCCCCAGGGACGGACC
CCTACACAGCTGGATTGGCTGCAGCAGCGACACTAGGCCCAGCTGTGGTCCCTCACCAGT
ATTATGGAGTTACTCCTTGGGGAGTCTACCCTGCCAGTCTTTTCCAGCGGTGAATTCTGC
CCTTGCTTTTGGACAAGGTCTAGCTGCAGGCATGCCAGGTTATCCAGTCTTGGCTCCCGC
TGCTTACTATGACCAAACTGGTGCCCTTGTGGTGAATGCAGGAGCGAGAAATGGTCTTGG
AGCTCCCGTTCGACTTGTAGCTCCTGCCCCAGTCATCATTAGTTCCTCAGCTGCACAAGC
AGCTGTTGCAGCAGCTGCAGCTTCAGCAAATGGAGCGGCCGGTGGTCTTGCTGGAACAAC
AAATGGACCATTTCGCCCTTTAGGAACCCAGCAGCCTCAGCCCCAGCCCCAGCAGCAGCC
CAGTAACAACCTGGCATCCAGTTCTTTCTATGGCAACAACTCTCTGAGCAGCAATTCACA
GAGCAGCTCCCTCTTCTCCCAGGGCTCTGCCCAGCCTGCCAACACATCCTTGGGATTTGG
AAGTAGCAGTTCTCTCGGCGCCACACTGGGATCAGCCCTTGGAGGGTTTGGAACAGCAGT
TGCAAACTCCAACACTGGCAGTGGCTCCCGCCGTGACTCCCTGACTGGCAGCAGTGACCT
TTATAAGAGGACATCGAGCAGCTTGACCCCCATTGGACACAGTTTTTATAACGGCCTTAG
CTTTTCCTCCTTTCCTGGACCCGTGGGCATGCCTCTCCCTAGTCAGGGACCAGGACATTC
ACAGACACCACCTCCTTCCCTCTCTTCACACGGATCCTCTTCAAGCTTAAACCTGGGAGG
ACTCACAAATGGCAGTGGAAGATACATCTCTGCTGCTCCAGGCGCTGAAGCCAAGTACCG
CAGTGCGAGCAGTGCCTCCAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTACAATTCTCAACAACAGCTGTTCCAAAGACCTAACGCACTTGCTGTCCAGCAGTTGA
CAGCCGCTCAGCAACAGCAGTATGCGCTGGCAGCCGCGCATCAGCCCCACATCGGTTTAG
CTCCCGCTGCGTTTGTCCCCAATCCATACATCATCAGTGCCGCGCCCCCAGGGACGGACC
CCTACACAGCTGGATTGGCTGCAGCAGCGACACTAGGCCCAGCTGTGGTCCCTCACCAGT
ATTATGGAGTTACTCCTTGGGGAGTCTACCCTGCCAGTCTTTTCCAGCGGTGAATTCTGC
CCTTGCTTTTGGACAAGGTCTAGCTGCAGGCATGCCAGGTTATCCAGTCTTGGCTCCCGC
TGCTTACTATGACCAAACTGGTGCCCTTGTGGTGAATGCAGGAGCGAGAAATGGTCTTGG
AGCTCCCGTTCGACTTGTAGCTCCTGCCCCAGTCATCATTAGTTCCTCAGCTGCACAAGC
AGCTGTTGCAGCAGCTGCAGCTTCAGCAAATGGAGCGGCCGGTGGTCTTGCTGGAACAAC
AAATGGACCATTTCGCCCTTTAGGAACCCAGCAGCCTCAGCCCCAGCCCCAGCAGCAGCC
CAGTAACAACCTGGCATCCAGTTCTTTCTATGGCAACAACTCTCTGAGCAGCAATTCACA
GAGCAGCTCCCTCTTCTCCCAGGGCTCTGCCCAGCCTGCCAACACATCCTTGGGATTTGG
AAGTAGCAGTTCTCTCGGCGCCACACTGGGATCAGCCCTTGGAGGGTTTGGAACAGCAGT
TGCAAACTCCAACACTGGCAGTGGCTCCCGCCGTGACTCCCTGACTGGCAGCAGTGACCT
TTATAAGAGGACATCGAGCAGCTTGACCCCCATTGGACACAGTTTTTATAACGGCCTTAG
CTTTTCCTCCTTTCCTGGACCCGTGGGCATGCCTCTCCCTAGTCAGGGACCAGGACATTC
ACAGACACCACCTCCTTCCCTCTCTTCACACGGATCCTCTTCAAGCTTAAACCTGGGAGG
ACTCACAAATGGCAGTGGAAGATACATCTCTGCTGCTCCAGGCGCTGAAGCCAAGTACCG
CAGTGCGAGCAGTGCCTCCAGCCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               336-485, gnl|bosTau2|chr2 (75185379-75185230)
               

               
               336-485, gnl|Hg17|chr1 (31109253-31109104)
               

               
               336-485, gnl|Mm7|chr4 (129965842-129965991)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               336-485, gnl|bosTau2|chr2 (75185379-75185230)
               

               
               336-485, gnl|Hg17|chr1 (31109253-31109104)
               

               
               336-485, gnl|Mm7|chr4 (129965842-129965991)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	336-485, gnl\|bosTau2\|chr2 (75185379-75185230)
	336-485, gnl\|Hg17\|chr1 (31109253-31109104)
	336-485, gnl\|Mm7\|chr4 (129965842-129965991)