Non-Coding RNA Search

Ss1.1-rpigcb_0983.5

Sequence:


               
               GCTCGGAGAGAGGAGACGTGGAGGAAGGGACGGAGCCCGGACAGCGGCGGACACGGCCTC
GCGCGCCAGGAAGATCGCAGCACACAGAAGGCGCCGAGCGCCGGACACTGAGAGGGGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCGGAGAGAGGAGACGTGGAGGAAGGGACGGAGCCCGGACAGCGGCGGACACGGCCTC
GCGCGCCAGGAAGATCGCAGCACACAGAAGGCGCCGAGCGCCGGACACTGAGAGGGGCAT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-119, gnl|bosTau2|chr5 (32591046-32590928)
               

               
               1-119, gnl|canFam2|chr10 (4209623-4209956)
               

               
               1-119, gnl|dasNov1|scaffold_8810 (2028-1673)
               

               
               1-119, gnl|galGal2|chr27_random (303503-303193)
               

               
               1-119, gnl|hg17|chr12 (55769146-55769515)
               

               
               1-119, gnl|Hg17|chr12 (55769180-55769298)
               

               
               1-119, gnl|mm7|chr10 (127168015-127167655)
               

               
               1-119, gnl|Mm7|chr10 (127167982-127167870)
               

               
               1-119, gnl|monDom2|scaffold_303 (170557-170916)
               

               
               1-119, gnl|panTro1|chr10 (57008640-57009009)
               

               
               1-119, gnl|rheMac2|chr11 (54153400-54153770)
               

               
               1-119, gnl|rn3|chr7 (67669404-67669045)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-119, gnl|bosTau2|chr5 (32591046-32590928)
               

               
               1-119, gnl|canFam2|chr10 (4209623-4209956)
               

               
               1-119, gnl|dasNov1|scaffold_8810 (2028-1673)
               

               
               1-119, gnl|galGal2|chr27_random (303503-303193)
               

               
               1-119, gnl|hg17|chr12 (55769146-55769515)
               

               
               1-119, gnl|Hg17|chr12 (55769180-55769298)
               

               
               1-119, gnl|mm7|chr10 (127168015-127167655)
               

               
               1-119, gnl|Mm7|chr10 (127167982-127167870)
               

               
               1-119, gnl|monDom2|scaffold_303 (170557-170916)
               

               
               1-119, gnl|panTro1|chr10 (57008640-57009009)
               

               
               1-119, gnl|rheMac2|chr11 (54153400-54153770)
               

               
               1-119, gnl|rn3|chr7 (67669404-67669045)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.31224)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)

	1-119, gnl\|bosTau2\|chr5 (32591046-32590928)
	1-119, gnl\|canFam2\|chr10 (4209623-4209956)
	1-119, gnl\|dasNov1\|scaffold_8810 (2028-1673)
	1-119, gnl\|galGal2\|chr27_random (303503-303193)
	1-119, gnl\|hg17\|chr12 (55769146-55769515)
	1-119, gnl\|Hg17\|chr12 (55769180-55769298)
	1-119, gnl\|mm7\|chr10 (127168015-127167655)
	1-119, gnl\|Mm7\|chr10 (127167982-127167870)
	1-119, gnl\|monDom2\|scaffold_303 (170557-170916)
	1-119, gnl\|panTro1\|chr10 (57008640-57009009)
	1-119, gnl\|rheMac2\|chr11 (54153400-54153770)
	1-119, gnl\|rn3\|chr7 (67669404-67669045)