Non-Coding RNA Search

Ss1.1-rpigcb_1023.5

Sequence:


               
               ACTCATATTTTTAACATTGCTGATAAAAATTATGTTCCTGTGTTTCACATGTAAAAATAT
ATAGACAAGTTAAATATAGTGAATAAAATATTTTACATAGTCATGCATTTAAAATTTTCA
AGAGATTAGCCACTAAGACTAAATTTACAAGGGAAAAGCTTTTTGTTTGATAGTTATTTC
TTCTTAGCTCTAATTTCAAAATGTCATTTAAGTTCTCACAGTACAGTGTGGCTGTTTCAC
ACTGTATGTACACTGTTTTCTGTAGGAATGGGAAAGATAATTATATATAGGATCATGATT
TATTTTTTAGCCGTGTGCCAAATGGGAATAATGATTACTTAATAATCAGTATTTTGAAGC
CTTATGTTACCAAAACGTATAGTAAAAAAGTGGAAATTTATGGATTACTTTTTGAAAAAA
AAGCTTATTTTGTCCTTTAGTAAAGGGAATGCTTTAGCATTAGTTTGTGTATCTTTCCTT
CTGTAGAAATTGCAATTTCTTCTTTGGTCAGCATTTGTTTAGTCATGGCAGGTCCTGCTT
TTAAGATCTTTTTGAGACTTAGTAAGCTTTCTGTTTGAGAAAGCCCTGTTGAGACTCGTA
AGTTGTCACCTCACTTAGGTCAGGTGAAACTTGACAGCCACCATGGAAGGAAGATGGTCA
GCACTAGGTGGCAGTTTTACTAGGCTGGCACTTTGCATGGTAGCAAAGTGCTGCCACTGG
TGAGCTCTCTGGATCAAAGTGTAGACTAAAGTTGATGCCACTGGCAGACTTAGGGATGCT
GGACAGACCTGTAGTCCCTTTTAAGTCATGTCTGGATAGGAATTTCCTCAGTAACACACT
CTTGTGTCCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCATATTTTTAACATTGCTGATAAAAATTATGTTCCTGTGTTTCACATGTAAAAATAT
ATAGACAAGTTAAATATAGTGAATAAAATATTTTACATAGTCATGCATTTAAAATTTTCA
AGAGATTAGCCACTAAGACTAAATTTACAAGGGAAAAGCTTTTTGTTTGATAGTTATTTC
TTCTTAGCTCTAATTTCAAAATGTCATTTAAGTTCTCACAGTACAGTGTGGCTGTTTCAC
ACTGTATGTACACTGTTTTCTGTAGGAATGGGAAAGATAATTATATATAGGATCATGATT
TATTTTTTAGCCGTGTGCCAAATGGGAATAATGATTACTTAATAATCAGTATTTTGAAGC
CTTATGTTACCAAAACGTATAGTAAAAAAGTGGAAATTTATGGATTACTTTTTGAAAAAA
AAGCTTATTTTGTCCTTTAGTAAAGGGAATGCTTTAGCATTAGTTTGTGTATCTTTCCTT
CTGTAGAAATTGCAATTTCTTCTTTGGTCAGCATTTGTTTAGTCATGGCAGGTCCTGCTT
TTAAGATCTTTTTGAGACTTAGTAAGCTTTCTGTTTGAGAAAGCCCTGTTGAGACTCGTA
AGTTGTCACCTCACTTAGGTCAGGTGAAACTTGACAGCCACCATGGAAGGAAGATGGTCA
GCACTAGGTGGCAGTTTTACTAGGCTGGCACTTTGCATGGTAGCAAAGTGCTGCCACTGG
TGAGCTCTCTGGATCAAAGTGTAGACTAAAGTTGATGCCACTGGCAGACTTAGGGATGCT
GGACAGACCTGTAGTCCCTTTTAAGTCATGTCTGGATAGGAATTTCCTCAGTAACACACT
CTTGTGTCCATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               610-808, - strand, RNAz p=0.938876

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               610-808, - strand, RNAz p=0.938876

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-844, gnl|bosTau2|chr22 (33173871-33174704)
               

               
               1-844, gnl|Hg17|chr3 (57280032-57280874)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-844, gnl|bosTau2|chr22 (33173871-33174704)
               

               
               1-844, gnl|Hg17|chr3 (57280032-57280874)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cty (0.20816)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)

	1-844, gnl\|bosTau2\|chr22 (33173871-33174704)
	1-844, gnl\|Hg17\|chr3 (57280032-57280874)