Non-Coding RNA Search

Ss1.1-rpigcb_10371.5

Sequence:


               
               AAGAACTCCAAAGATTCTACTGGGAAAAAAAGAGAAGACCCCAAACCAGGCCCTAAAAAA
CCCAAAGAGAAAGTGGATGCACTCTCACAGTTTGATCTCAACAACTATGCAAGTGTTGTT
ATAATCGATGACCATCCTGAAGTAACGGTAGTTGAAGATCCTCAGTCAAATTTAAATGAT
GATGGTTTTACCGAAGTGGTATCCAAAAAACAACAAAAACGTCTACAGGATGAGGAACGC
CGAAAGAAGGAAGAACAAATCATACAGGTTTGGAATAAAAAGAATGCAAGTGAAAAAGGA
AGAAGTCAGACTTCCAAGCTCCCGCCAAGATTTGCCAAAAAACAGGCTACGGGGACCCAG
CAAGCACAGCCTCCAGCCTCTGCTCTGGTCTCAGCTCCCGGTCCAGGTTCAACCTCAGCT
CCTGTTCCAGCCACAACTTCAGCTCCAGTTCTAGCCTCAGCCCCAGCCCCAGTTCTAGCA
TCATCCTCGGCTCCAGTTTCAGCCCCAGCTGCAGTTCCAATCTTAACCTCCACCTCTGCT
GCACTTCCAACATTAGCCTCTGCCTCAGCTCCAGTTCCAGCCCCAGCCTCCACCTCAGCT
ACAGCCACAGCCTCTTCTTCAGTTCCAGCTCCAACCCCAATCCTTGCCTCAGTTTCCACA
TCAGCTTCTGTCCCCATCCTTACCTCAGCCTCAATTCCCATCCTTGCTTCAGCCCTAGCA
CCAGCTTCAGTTCCATCTCCAGCTGTCTCAGCCCCAACTGTCCCCACATCAACCCCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAACTCCAAAGATTCTACTGGGAAAAAAAGAGAAGACCCCAAACCAGGCCCTAAAAAA
CCCAAAGAGAAAGTGGATGCACTCTCACAGTTTGATCTCAACAACTATGCAAGTGTTGTT
ATAATCGATGACCATCCTGAAGTAACGGTAGTTGAAGATCCTCAGTCAAATTTAAATGAT
GATGGTTTTACCGAAGTGGTATCCAAAAAACAACAAAAACGTCTACAGGATGAGGAACGC
CGAAAGAAGGAAGAACAAATCATACAGGTTTGGAATAAAAAGAATGCAAGTGAAAAAGGA
AGAAGTCAGACTTCCAAGCTCCCGCCAAGATTTGCCAAAAAACAGGCTACGGGGACCCAG
CAAGCACAGCCTCCAGCCTCTGCTCTGGTCTCAGCTCCCGGTCCAGGTTCAACCTCAGCT
CCTGTTCCAGCCACAACTTCAGCTCCAGTTCTAGCCTCAGCCCCAGCCCCAGTTCTAGCA
TCATCCTCGGCTCCAGTTTCAGCCCCAGCTGCAGTTCCAATCTTAACCTCCACCTCTGCT
GCACTTCCAACATTAGCCTCTGCCTCAGCTCCAGTTCCAGCCCCAGCCTCCACCTCAGCT
ACAGCCACAGCCTCTTCTTCAGTTCCAGCTCCAACCCCAATCCTTGCCTCAGTTTCCACA
TCAGCTTCTGTCCCCATCCTTACCTCAGCCTCAATTCCCATCCTTGCTTCAGCCCTAGCA
CCAGCTTCAGTTCCATCTCCAGCTGTCTCAGCCCCAACTGTCCCCACATCAACCCCAGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47210121|emb|CAF89708.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47210121|emb|CAF89708.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               266-382, - strand, RNAz p=0.822491

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               266-382, - strand, RNAz p=0.822491

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-115, gnl|bosTau2|chr16 (27311599-27311713)
               

               
               1-115, gnl|Hg17|chr1 (168246373-168246487)
               

               
               1-115, gnl|Mm7|chr1 (162663520-162663406)
               


               
               266-776, gnl|bosTau2|chr16 (27317049-27317553)
               

               
               266-776, gnl|Hg17|chr1 (168258035-168258608)
               

               
               266-776, gnl|Mm7|chr1 (162659502-162658989)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-115, gnl|bosTau2|chr16 (27311599-27311713)
               

               
               1-115, gnl|Hg17|chr1 (168246373-168246487)
               

               
               1-115, gnl|Mm7|chr1 (162663520-162663406)
               


               
               266-776, gnl|bosTau2|chr16 (27317049-27317553)
               

               
               266-776, gnl|Hg17|chr1 (168258035-168258608)
               

               
               266-776, gnl|Mm7|chr1 (162659502-162658989)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               clu (0.239292)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               cty (0.10408)

	1-115, gnl\|bosTau2\|chr16 (27311599-27311713)
	1-115, gnl\|Hg17\|chr1 (168246373-168246487)
	1-115, gnl\|Mm7\|chr1 (162663520-162663406)

	266-776, gnl\|bosTau2\|chr16 (27317049-27317553)
	266-776, gnl\|Hg17\|chr1 (168258035-168258608)
	266-776, gnl\|Mm7\|chr1 (162659502-162658989)