Ss1.1-rpigcb_10570.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATATCCCTTTTTTTTTCCTTTCCTTTTAGAATATGGTTTCTAGTTTTAGGGTTTCTGAAC TACAAGTGTTACTAGGCTTTGCTGGACGGAATAAAAGTGGACGCAAGCATGACCTCCTGA TGAGGGCGCTGCATTTATTGAAGAGCGGCTGCAGCCCTGCGGTTCAGATTAAAATCCGAG AACTGTATAGACGCCGATACCCACGGACTCTTGAAGGCCTTTCTGATTTATCCACAATCA AATCATCGGTCTTCAGTTTGGATGGTAGCTCATCGCCTGTAGAACCTGACTTGGCTGTGG CTGGAATCCACTCGTTGCCTTCCACTTCAGTTACACCTCACTCACCGCCCTCTCCTGTTG GTTCAGTGCTGCTTCAAGATACTAAACCCACCTTTGAGATGCAGCAGCCATCTCCCCCAA TTCCTCCTGTCCATCCTGACGTGCAGTTAAAAAACTTGCCCTTTTATGATGTCCTTGATG TTCTTATCAAGCCCACAAGTTTAGGTAAGTGGTAGAGAAATCAGTTTCTTCTGGACAAGC GAGTAAATAAAGCAAGAGGCCTTCAACTATTAATGGTTTGCTATTAATAGTATAAAATTG AGGCATTAAAATGCCAAATGTCTAAATGTATAGATTTGAGACTTTGCCTGGCAGAGACAA GTTGCCCTCAAGAAGATAACTATCCTAATAGTCTCTGCATAAAAGTAAATGGGAAGCTGT TTCCTTTGCCTGGCTATGCACCACCACCCAAAAATGGGATTGAACAGAAGCGCCCTGGAC GCCCTTTGAATATTACATCTTTAGTTAGGTTGTCTTCAGCTGTGCCAAACCAGATTTCCA TTTCTTGGGCATCAGAAATTGGAAAGAATTACTCCATGTCTGTATATCTTGTACGACAGC TCACATCAGCCATGTTATTGCAGAGATTAAAAATGAAAGGTATTAGAAACCCTGATCATT CCAGAGCACTAATTAAAGAAAAACTTACTGCAGATCCTGATAGTGAAATTGCTACAACTA GTCTTCGAGTGTCCTTGATGTGCCCTTTAGGAAAAATGAGGCTGACAATCCCGTGCCGCG CAGTGACGTGTACACATCTGCAGTGCTTTGATGCTGCCCTGTATCTTCAGATGAATGAGA AGAAGCCCACCTGGATTTGTCCTGTTTGTGACAAAAAGGCTGCCTATGAGAGTCTGATAC TAGATGGGCTTTTTATGGAAATTCTCAATGACTGTTCTGATGTGGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATATCCCTTTTTTTTTCCTTTCCTTTTAGAATATGGTTTCTAGTTTTAGGGTTTCTGAAC TACAAGTGTTACTAGGCTTTGCTGGACGGAATAAAAGTGGACGCAAGCATGACCTCCTGA TGAGGGCGCTGCATTTATTGAAGAGCGGCTGCAGCCCTGCGGTTCAGATTAAAATCCGAG AACTGTATAGACGCCGATACCCACGGACTCTTGAAGGCCTTTCTGATTTATCCACAATCA AATCATCGGTCTTCAGTTTGGATGGTAGCTCATCGCCTGTAGAACCTGACTTGGCTGTGG CTGGAATCCACTCGTTGCCTTCCACTTCAGTTACACCTCACTCACCGCCCTCTCCTGTTG GTTCAGTGCTGCTTCAAGATACTAAACCCACCTTTGAGATGCAGCAGCCATCTCCCCCAA TTCCTCCTGTCCATCCTGACGTGCAGTTAAAAAACTTGCCCTTTTATGATGTCCTTGATG TTCTTATCAAGCCCACAAGTTTAGGTAAGTGGTAGAGAAATCAGTTTCTTCTGGACAAGC GAGTAAATAAAGCAAGAGGCCTTCAACTATTAATGGTTTGCTATTAATAGTATAAAATTG AGGCATTAAAATGCCAAATGTCTAAATGTATAGATTTGAGACTTTGCCTGGCAGAGACAA GTTGCCCTCAAGAAGATAACTATCCTAATAGTCTCTGCATAAAAGTAAATGGGAAGCTGT TTCCTTTGCCTGGCTATGCACCACCACCCAAAAATGGGATTGAACAGAAGCGCCCTGGAC GCCCTTTGAATATTACATCTTTAGTTAGGTTGTCTTCAGCTGTGCCAAACCAGATTTCCA TTTCTTGGGCATCAGAAATTGGAAAGAATTACTCCATGTCTGTATATCTTGTACGACAGC TCACATCAGCCATGTTATTGCAGAGATTAAAAATGAAAGGTATTAGAAACCCTGATCATT CCAGAGCACTAATTAAAGAAAAACTTACTGCAGATCCTGATAGTGAAATTGCTACAACTA GTCTTCGAGTGTCCTTGATGTGCCCTTTAGGAAAAATGAGGCTGACAATCCCGTGCCGCG CAGTGACGTGTACACATCTGCAGTGCTTTGATGCTGCCCTGTATCTTCAGATGAATGAGA AGAAGCCCACCTGGATTTGTCCTGTTTGTGACAAAAAGGCTGCCTATGAGAGTCTGATAC TAGATGGGCTTTTTATGGAAATTCTCAATGACTGTTCTGATGTGGATG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 4-207, gnl|bosTau2|chr10 (10033043-10032843) | |
| 4-207, gnl|Hg17|chr15 (66165675-66165875) | |
| 4-207, gnl|Mm7|chr9 (62980579-62980378) | |
| 637-1248, gnl|bosTau2|chr16 (40860044-40859436) | |
| 637-1248, gnl|Hg17|chr18 (42680831-42663788) | |
| 637-1248, gnl|Mm7|chr18 (77408687-77415804) | |
| 1050-1208, gnl|bosTau2|chr10 (9936384-9936226) | |
| 1050-1208, gnl|canFam2|chr30 (35211064-35211239) | |
| 1050-1208, gnl|danRer3|chr18 (24154012-24154188) | |
| 1050-1208, gnl|dasNov1|scaffold_139780 (1677-1851) | |
| 1050-1208, gnl|echTel1|scaffold_308478 (26047-26221) | |
| 1050-1208, gnl|fr1|chrUn (122272860-122273024) | |
| 1050-1208, gnl|galGal2|chr10 (19809013-19809181) | |
| 1050-1208, gnl|hg17|chr15 (66253123-66253297) | |
| 1050-1208, gnl|Hg17|chr15 (66253127-66253285) | |
| 1050-1208, gnl|loxAfr1|scaffold_56643 (8588-8414) | |
| 1050-1208, gnl|mm7|chr9 (62924349-62924174) | |
| 1050-1208, gnl|Mm7|chr9 (62924343-62924185) | |
| 1050-1208, gnl|monDom2|scaffold_12 (43963450-43963276) | |
| 1050-1208, gnl|oryCun1|scaffold_193828 (12869-12694) | |
| 1050-1208, gnl|panTro1|chr16 (66762782-66762956) | |
| 1050-1208, gnl|rheMac2|chr7 (46772408-46772582) | |
| 1050-1208, gnl|rn3|chr8 (67058126-67057951) | |
| 1050-1208, gnl|tetNig1|chr13 (7745770-7745935) | |
| 1050-1208, gnl|xenTro1|scaffold_5 (283604-283774) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-207, gnl|bosTau2|chr10 (10033043-10032843) | |
| 4-207, gnl|Hg17|chr15 (66165675-66165875) | |
| 4-207, gnl|Mm7|chr9 (62980579-62980378) | |
| 637-1248, gnl|bosTau2|chr16 (40860044-40859436) | |
| 637-1248, gnl|Hg17|chr18 (42680831-42663788) | |
| 637-1248, gnl|Mm7|chr18 (77408687-77415804) | |
| 1050-1208, gnl|bosTau2|chr10 (9936384-9936226) | |
| 1050-1208, gnl|canFam2|chr30 (35211064-35211239) | |
| 1050-1208, gnl|danRer3|chr18 (24154012-24154188) | |
| 1050-1208, gnl|dasNov1|scaffold_139780 (1677-1851) | |
| 1050-1208, gnl|echTel1|scaffold_308478 (26047-26221) | |
| 1050-1208, gnl|fr1|chrUn (122272860-122273024) | |
| 1050-1208, gnl|galGal2|chr10 (19809013-19809181) | |
| 1050-1208, gnl|hg17|chr15 (66253123-66253297) | |
| 1050-1208, gnl|Hg17|chr15 (66253127-66253285) | |
| 1050-1208, gnl|loxAfr1|scaffold_56643 (8588-8414) | |
| 1050-1208, gnl|mm7|chr9 (62924349-62924174) | |
| 1050-1208, gnl|Mm7|chr9 (62924343-62924185) | |
| 1050-1208, gnl|monDom2|scaffold_12 (43963450-43963276) | |
| 1050-1208, gnl|oryCun1|scaffold_193828 (12869-12694) | |
| 1050-1208, gnl|panTro1|chr16 (66762782-66762956) | |
| 1050-1208, gnl|rheMac2|chr7 (46772408-46772582) | |
| 1050-1208, gnl|rn3|chr8 (67058126-67057951) | |
| 1050-1208, gnl|tetNig1|chr13 (7745770-7745935) | |
| 1050-1208, gnl|xenTro1|scaffold_5 (283604-283774) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) | |
| cty (0.10408) |