Ss1.1-rpigcb_10585.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATACATCTACAGAACATACATCATCCAGTAAAGGACGCGTCTTCATTTTTAGTTCTTCC TCTTCTTCCTCCAGTTATTATGCAAAAACCTATGAAATCCTTAAGAAAAAGAGTTATCAG TTGTTGGTTGTTCAGAACACTGTTGAAGTGGCTCAATTTATCAATAACAATCCAGAATTT TTGCAACTTGCTGAGTCATTCTGGAAGGAACTCTCCTACCTTCCTCCTCTGTATGATTAC AGTGCCTACCGAAGATTAATTGACCAGTATGGGACACATTATCTGCAGTCTGGGTCCTTA GGAGGAGAATACAAAGTTTTATTTTATGTGGACTCAGAGAAAGTCGCAGAAAGCGATCTT AGTTCAGAGGATAAGAAGAAATGTGCTTCCTCACATATTAGTTTTCTATTTAAATCATCA AAGCACAAATGCAAGGCGATGGAAGAGGCCTTAAAATCAGCTTCAGGAACTCAGAGCAAT GTGTTGCGAGGGGTCCCGTTTGTCAGAGGGGGACGTCCTGGCTTTGTGTCTGGCCTTAGT TACCTGGAGCTGGACAACCCTGATGGAAACAAACAACGATATTCTTCCTGGGCAGGATCT GTGACTGATCTTCCCCAAGTCATAAAACAAAAGCTGACACCTTTGTATGAGCTGGTAAAG GAAGTACCCTGTGCTTCTGTGAAAAGACTGTACTTGAAACGGGCCCTGGAGGAGTATCTG GATGAATTTGACTCCTGCCATTGCCAACCTTGTCAAAACCGTGGCATGGCCAGTGTCGAG GGGACCCAGTGTCAGTGCCATTGCAAACCAAACACATTTGGTGTGGCGTGTGAACAAGGA GTCCTCGTAGGGGATCATGCAGGAGGCATTGATGGAGGGTGGAGTTGCTGGTCCTCTTGG GGCCCCTGTGCCCAAGGGAAGAAAACAAGGAGCCGAAAATGCAATAACCCACCCCCCAGT GGGGGTGGGAAATCCTGTATTGGAGAAACGTCAGAAAGCAGGCAATGCGAAGATGAAGAT CTGGAGCATCTTCGGTTGCTTGAACCACATTGTTTCCCTTTGTCTTTGGTTCCAACAGAA TTCTGTCCATCACCTCCTGCCTTGAAAGATGGATTTGTTCAAAATGAAGAGACCACGTTT CCTGTTGGGAAAAACATAGTGTACAGTTGCAATGAAGGATACTCTCTTGTTGGAGACCCT GTTGCCAGATGTGGAGAAGATTTACAGTGGACTGTTGGGAAAATGCATTGTCAGAAAATT GCCTGTGTTCTACCTACACTGATGCGTGGCTTACAGAGTCATCCCCAGAAGCCTTTCTAC ACAGTTGGCGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATACATCTACAGAACATACATCATCCAGTAAAGGACGCGTCTTCATTTTTAGTTCTTCC TCTTCTTCCTCCAGTTATTATGCAAAAACCTATGAAATCCTTAAGAAAAAGAGTTATCAG TTGTTGGTTGTTCAGAACACTGTTGAAGTGGCTCAATTTATCAATAACAATCCAGAATTT TTGCAACTTGCTGAGTCATTCTGGAAGGAACTCTCCTACCTTCCTCCTCTGTATGATTAC AGTGCCTACCGAAGATTAATTGACCAGTATGGGACACATTATCTGCAGTCTGGGTCCTTA GGAGGAGAATACAAAGTTTTATTTTATGTGGACTCAGAGAAAGTCGCAGAAAGCGATCTT AGTTCAGAGGATAAGAAGAAATGTGCTTCCTCACATATTAGTTTTCTATTTAAATCATCA AAGCACAAATGCAAGGCGATGGAAGAGGCCTTAAAATCAGCTTCAGGAACTCAGAGCAAT GTGTTGCGAGGGGTCCCGTTTGTCAGAGGGGGACGTCCTGGCTTTGTGTCTGGCCTTAGT TACCTGGAGCTGGACAACCCTGATGGAAACAAACAACGATATTCTTCCTGGGCAGGATCT GTGACTGATCTTCCCCAAGTCATAAAACAAAAGCTGACACCTTTGTATGAGCTGGTAAAG GAAGTACCCTGTGCTTCTGTGAAAAGACTGTACTTGAAACGGGCCCTGGAGGAGTATCTG GATGAATTTGACTCCTGCCATTGCCAACCTTGTCAAAACCGTGGCATGGCCAGTGTCGAG GGGACCCAGTGTCAGTGCCATTGCAAACCAAACACATTTGGTGTGGCGTGTGAACAAGGA GTCCTCGTAGGGGATCATGCAGGAGGCATTGATGGAGGGTGGAGTTGCTGGTCCTCTTGG GGCCCCTGTGCCCAAGGGAAGAAAACAAGGAGCCGAAAATGCAATAACCCACCCCCCAGT GGGGGTGGGAAATCCTGTATTGGAGAAACGTCAGAAAGCAGGCAATGCGAAGATGAAGAT CTGGAGCATCTTCGGTTGCTTGAACCACATTGTTTCCCTTTGTCTTTGGTTCCAACAGAA TTCTGTCCATCACCTCCTGCCTTGAAAGATGGATTTGTTCAAAATGAAGAGACCACGTTT CCTGTTGGGAAAAACATAGTGTACAGTTGCAATGAAGGATACTCTCTTGTTGGAGACCCT GTTGCCAGATGTGGAGAAGATTTACAGTGGACTGTTGGGAAAATGCATTGTCAGAAAATT GCCTGTGTTCTACCTACACTGATGCGTGGCTTACAGAGTCATCCCCAGAAGCCTTTCTAC ACAGTTGGCGAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 110-345, gnl|bosTau2|chr20 (20104140-20104375) | |
| 110-345, gnl|canFam2|chr4 (71677534-71677345) | |
| 110-345, gnl|danRer3|chr21 (11415681-11415870) | |
| 110-345, gnl|dasNov1|scaffold_10469 (39733-39579) | |
| 110-345, gnl|echTel1|scaffold_151786 (176-364) | |
| 110-345, gnl|fr1|chrUn (292656280-292656095) | |
| 110-345, gnl|galGal2|chrZ (6047831-6048020) | |
| 110-345, gnl|hg17|chr5 (40983446-40983635) | |
| 110-345, gnl|Hg17|chr5 (40983459-40983694) | |
| 110-345, gnl|loxAfr1|scaffold_4363 (78543-78731) | |
| 110-345, gnl|mm7|chr15 (4857021-4856832) | |
| 110-345, gnl|Mm7|chr15 (4857006-4856771) | |
| 110-345, gnl|monDom2|scaffold_20 (30086727-30086538) | |
| 110-345, gnl|oryCun1|scaffold_212908 (24527-24338) | |
| 110-345, gnl|panTro1|chr4 (75566531-75566342) | |
| 110-345, gnl|rheMac2|chr6 (40794567-40794756) | |
| 110-345, gnl|rn3|chr2 (54155436-54155247) | |
| 110-345, gnl|tetNig1|chr12 (8708203-8708018) | |
| 363-475, gnl|bosTau2|chr20 (20106507-20106620) | |
| 363-475, gnl|canFam2|chr4 (71675189-71674927) | |
| 363-475, gnl|dasNov1|scaffold_206 (205179-205443) | |
| 363-475, gnl|echTel1|scaffold_237338 (3013-2749) | |
| 363-475, gnl|hg17|chr5 (40985649-40985901) | |
| 363-475, gnl|Hg17|chr5 (40985770-40985883) | |
| 363-475, gnl|loxAfr1|scaffold_4363 (81715-81975) | |
| 363-475, gnl|mm7|chr15 (4847681-4847433) | |
| 363-475, gnl|Mm7|chr15 (4847566-4847450) | |
| 363-475, gnl|monDom2|scaffold_20 (30081532-30081271) | |
| 363-475, gnl|oryCun1|scaffold_212908 (22788-22522) | |
| 363-475, gnl|panTro1|chr4 (75564334-75564082) | |
| 363-475, gnl|rheMac2|chr6 (40796722-40796969) | |
| 363-475, gnl|rn3|chr2 (54152936-54152686) | |
| 632-863, gnl|bosTau2|chr20 (20111546-20111777) | |
| 632-863, gnl|Hg17|chr5 (40993890-40994121) | |
| 632-863, gnl|Mm7|chr15 (4837038-4836807) | |
| 1124-1255, gnl|bosTau2|chr20 (20119802-20119933) | |
| 1124-1255, gnl|canFam2|chr29 (8903922-8904056) | |
| 1124-1255, gnl|echTel1|scaffold_315663 (96639-96520) | |
| 1124-1255, gnl|Hg17|chr5 (41000601-41000732) | |
| 1124-1255, gnl|hg17|chr8 (55429933-55430067) | |
| 1124-1255, gnl|loxAfr1|scaffold_12604 (54352-54234) | |
| 1124-1255, gnl|mm7|chr15 (4830198-4830079) | |
| 1124-1255, gnl|Mm7|chr15 (4830187-4830056) | |
| 1124-1255, gnl|oryCun1|scaffold_183939 (37770-37890) | |
| 1124-1255, gnl|panTro1|chr7 (57112864-57112998) | |
| 1124-1255, gnl|rheMac2|chr8 (56939635-56939769) | |
| 1124-1255, gnl|rn3|chr2 (54127367-54127248) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 110-345, gnl|bosTau2|chr20 (20104140-20104375) | |
| 110-345, gnl|canFam2|chr4 (71677534-71677345) | |
| 110-345, gnl|danRer3|chr21 (11415681-11415870) | |
| 110-345, gnl|dasNov1|scaffold_10469 (39733-39579) | |
| 110-345, gnl|echTel1|scaffold_151786 (176-364) | |
| 110-345, gnl|fr1|chrUn (292656280-292656095) | |
| 110-345, gnl|galGal2|chrZ (6047831-6048020) | |
| 110-345, gnl|hg17|chr5 (40983446-40983635) | |
| 110-345, gnl|Hg17|chr5 (40983459-40983694) | |
| 110-345, gnl|loxAfr1|scaffold_4363 (78543-78731) | |
| 110-345, gnl|mm7|chr15 (4857021-4856832) | |
| 110-345, gnl|Mm7|chr15 (4857006-4856771) | |
| 110-345, gnl|monDom2|scaffold_20 (30086727-30086538) | |
| 110-345, gnl|oryCun1|scaffold_212908 (24527-24338) | |
| 110-345, gnl|panTro1|chr4 (75566531-75566342) | |
| 110-345, gnl|rheMac2|chr6 (40794567-40794756) | |
| 110-345, gnl|rn3|chr2 (54155436-54155247) | |
| 110-345, gnl|tetNig1|chr12 (8708203-8708018) | |
| 363-475, gnl|bosTau2|chr20 (20106507-20106620) | |
| 363-475, gnl|canFam2|chr4 (71675189-71674927) | |
| 363-475, gnl|dasNov1|scaffold_206 (205179-205443) | |
| 363-475, gnl|echTel1|scaffold_237338 (3013-2749) | |
| 363-475, gnl|hg17|chr5 (40985649-40985901) | |
| 363-475, gnl|Hg17|chr5 (40985770-40985883) | |
| 363-475, gnl|loxAfr1|scaffold_4363 (81715-81975) | |
| 363-475, gnl|mm7|chr15 (4847681-4847433) | |
| 363-475, gnl|Mm7|chr15 (4847566-4847450) | |
| 363-475, gnl|monDom2|scaffold_20 (30081532-30081271) | |
| 363-475, gnl|oryCun1|scaffold_212908 (22788-22522) | |
| 363-475, gnl|panTro1|chr4 (75564334-75564082) | |
| 363-475, gnl|rheMac2|chr6 (40796722-40796969) | |
| 363-475, gnl|rn3|chr2 (54152936-54152686) | |
| 632-863, gnl|bosTau2|chr20 (20111546-20111777) | |
| 632-863, gnl|Hg17|chr5 (40993890-40994121) | |
| 632-863, gnl|Mm7|chr15 (4837038-4836807) | |
| 1124-1255, gnl|bosTau2|chr20 (20119802-20119933) | |
| 1124-1255, gnl|canFam2|chr29 (8903922-8904056) | |
| 1124-1255, gnl|echTel1|scaffold_315663 (96639-96520) | |
| 1124-1255, gnl|Hg17|chr5 (41000601-41000732) | |
| 1124-1255, gnl|hg17|chr8 (55429933-55430067) | |
| 1124-1255, gnl|loxAfr1|scaffold_12604 (54352-54234) | |
| 1124-1255, gnl|mm7|chr15 (4830198-4830079) | |
| 1124-1255, gnl|Mm7|chr15 (4830187-4830056) | |
| 1124-1255, gnl|oryCun1|scaffold_183939 (37770-37890) | |
| 1124-1255, gnl|panTro1|chr7 (57112864-57112998) | |
| 1124-1255, gnl|rheMac2|chr8 (56939635-56939769) | |
| 1124-1255, gnl|rn3|chr2 (54127367-54127248) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| col (0.195008) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cly (0.120642) | |
| clu (0.119646) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cly (0.120642) | |
| clu (0.119646) | |
| cty (0.10408) |