Non-Coding RNA Search

Ss1.1-rpigcb_11008.5

Sequence:


               
               GAAATAAAACTTGGAGTGAGTAAAAGTGACAGGCTCTACGCTATGAAGGCCGAGGTCCTG
GCTCGCGCTGGCATCCCCACCTCCAGCGTCTTTGCGTTGCATTTTACCGAGCCACCCGTC
TCTGCCCAGCTGCTGGCTTTCCTCCGAGTTTTCTGCATGACCGAAGGGGAACTGAAGGAG
CATGTGCTGGGAGAGAACGCTATCGATAGAATCTTCACCTTGGGGAACTCTGAGTATCCT
GTTAGCTGGGACAACGAGGTCAAACTGTGGACATTTCTTGAAGACCGAGCCTCACTTCTT
TTAAAAACATATAAAACAACCATTGAGGAAGACAAGACCTTCCTAAAGAACCACGGCCTT
TCTGTTCGGGCCACCATGGCCGTCAAGCTGCGCTTGGGGGAGAAGGAGATTTTAGAAAAA
GCCGTCGAGAGCGCCGCGGCGAACCGGGAGTTCTACCGCCGGCAGCTAGAGACGCGGGCC
CCGCTCCCCAGGTACGAGGAGGGGAGCCCGGGGCTGCTGGAGGGCTCGGCGGACTCGCGG
CTGCCCCTGGGCCTCAGGAACCTGGACGAGGAGGCCGGCGCGCAGGAGGCCCTGACGCTC
CCCGAGGCCGTCCGCAGGGCGCGGGCCGCCGAGCGCGGGCTCCTGAACGGCGAGAACTCT
CTCCCCAACGGGACCGGGGCGGAAAAGGGAAGTTCAGACGGAGAGGAAAGTCCAAGAGCG
CCTGGAGCCGCCAAAGAGTCTTCCGACGGCAGCGAGGGGCTCGGCCGGGGGCGCTGAGAG
CCGCCCGGCGCGGTTGAGCGCGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATAAAACTTGGAGTGAGTAAAAGTGACAGGCTCTACGCTATGAAGGCCGAGGTCCTG
GCTCGCGCTGGCATCCCCACCTCCAGCGTCTTTGCGTTGCATTTTACCGAGCCACCCGTC
TCTGCCCAGCTGCTGGCTTTCCTCCGAGTTTTCTGCATGACCGAAGGGGAACTGAAGGAG
CATGTGCTGGGAGAGAACGCTATCGATAGAATCTTCACCTTGGGGAACTCTGAGTATCCT
GTTAGCTGGGACAACGAGGTCAAACTGTGGACATTTCTTGAAGACCGAGCCTCACTTCTT
TTAAAAACATATAAAACAACCATTGAGGAAGACAAGACCTTCCTAAAGAACCACGGCCTT
TCTGTTCGGGCCACCATGGCCGTCAAGCTGCGCTTGGGGGAGAAGGAGATTTTAGAAAAA
GCCGTCGAGAGCGCCGCGGCGAACCGGGAGTTCTACCGCCGGCAGCTAGAGACGCGGGCC
CCGCTCCCCAGGTACGAGGAGGGGAGCCCGGGGCTGCTGGAGGGCTCGGCGGACTCGCGG
CTGCCCCTGGGCCTCAGGAACCTGGACGAGGAGGCCGGCGCGCAGGAGGCCCTGACGCTC
CCCGAGGCCGTCCGCAGGGCGCGGGCCGCCGAGCGCGGGCTCCTGAACGGCGAGAACTCT
CTCCCCAACGGGACCGGGGCGGAAAAGGGAAGTTCAGACGGAGAGGAAAGTCCAAGAGCG
CCTGGAGCCGCCAAAGAGTCTTCCGACGGCAGCGAGGGGCTCGGCCGGGGGCGCTGAGAG
CCGCCCGGCGCGGTTGAGCGCGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26326943|dbj|BAC27215.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26326943|dbj|BAC27215.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               326-754, gnl|bosTau2|chr21 (44121759-44121331)
               

               
               326-754, gnl|Hg17|chr14 (98935217-98934789)
               

               
               326-754, gnl|Mm7|chr12 (105628855-105628430)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               326-754, gnl|bosTau2|chr21 (44121759-44121331)
               

               
               326-754, gnl|Hg17|chr14 (98935217-98934789)
               

               
               326-754, gnl|Mm7|chr12 (105628855-105628430)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.132802)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               cty (0.10408)

	326-754, gnl\|bosTau2\|chr21 (44121759-44121331)
	326-754, gnl\|Hg17\|chr14 (98935217-98934789)
	326-754, gnl\|Mm7\|chr12 (105628855-105628430)