Ss1.1-rpigcb_11113.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGATGTCTGACCATGGAGATGTGAGCCTCCCACCTGAAGACCGGGTGAGGGCTCTCTCCC AGATAGGTAGCGCAGTAGAGGTAAATGAAGACATTCCACCCCGTCGGTACTTCCGCTCTG GAATGGAGATTATCCGGATGGCATCTATTTACTCTGAGGAAGGCAACATTGAACATGCCT TCATCCTCTATAACAAGTACATCACGCTCTTTATTGAGAAACTACCAAAGCATCGAGATT ACAAAACGGCTGTCATTCCAGAAAAGAAAGACACAGTAAAGAAATTAAAGGAGATTGCAT TTCCCAAAGCAGAAGAGCTAAAAGCAGAACTATTAAAACGATATACCAAAGAATATGCAG AATATAATGAAGAAAAAAAGAGGGAAGCGGAAGAACTTGCCCGAAACATAGCCATCCAGC AAGAGCTGGAAAAGGAAAGACAGAGGGTGGCACAGCAGAAGCAGCAACAGTTGGAGCAGG AACAGTTCCATGCGTTTGAGGAGATGATCCGAAACCAGGAGCTAGAAAAAGAACGCCTGA AAATTGTACAGGAATTTGGGAAGGTGGACCCAGGCCTAGATGGCCCCCTGCTCCCTGGCT TGGAGAAGCCCTCGCTAGATGTGTCCCCCACAGCACCTGTTATATCCACGCAGCCTTCGG ACTGTAATACAACTGTAAGACCTGCCAAGCCACCTGTGGTGGACAGGTCCTTGAAACCGG GAGCATTGAGCAACTCAGGAAGTACTCCTACGATCGACGGCCTGCGCCACGTGGTGGTGC CTGAGAAGCTCTGCCCACAGTTTCTCCAGCTGGCCAGTGCCAACACTGCCCGGGGAGTAG AGACGTGTGGGATTCTCTGCGGAAAACTGATGAGGAATGAGTTCACCATTACCCACGTTC TCATCCCCAAGCAAAGTGCTGGGTCTGATTATGGCAACACTGAGAATGAAGAAGAGCTTT TCCTCATACAGGATCAGCAGGGTCTCATCACACTGGGCTGGATTCATACTCATCCCACAC AGACCGCCTTCCTCTCCAGCGTTGACCTGCACACTCACTGCTCCTACCAGATGATGTTGC CAGAGTCTATAGCCATTGTTTGTTCCCCCAAGTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGATGTCTGACCATGGAGATGTGAGCCTCCCACCTGAAGACCGGGTGAGGGCTCTCTCCC AGATAGGTAGCGCAGTAGAGGTAAATGAAGACATTCCACCCCGTCGGTACTTCCGCTCTG GAATGGAGATTATCCGGATGGCATCTATTTACTCTGAGGAAGGCAACATTGAACATGCCT TCATCCTCTATAACAAGTACATCACGCTCTTTATTGAGAAACTACCAAAGCATCGAGATT ACAAAACGGCTGTCATTCCAGAAAAGAAAGACACAGTAAAGAAATTAAAGGAGATTGCAT TTCCCAAAGCAGAAGAGCTAAAAGCAGAACTATTAAAACGATATACCAAAGAATATGCAG AATATAATGAAGAAAAAAAGAGGGAAGCGGAAGAACTTGCCCGAAACATAGCCATCCAGC AAGAGCTGGAAAAGGAAAGACAGAGGGTGGCACAGCAGAAGCAGCAACAGTTGGAGCAGG AACAGTTCCATGCGTTTGAGGAGATGATCCGAAACCAGGAGCTAGAAAAAGAACGCCTGA AAATTGTACAGGAATTTGGGAAGGTGGACCCAGGCCTAGATGGCCCCCTGCTCCCTGGCT TGGAGAAGCCCTCGCTAGATGTGTCCCCCACAGCACCTGTTATATCCACGCAGCCTTCGG ACTGTAATACAACTGTAAGACCTGCCAAGCCACCTGTGGTGGACAGGTCCTTGAAACCGG GAGCATTGAGCAACTCAGGAAGTACTCCTACGATCGACGGCCTGCGCCACGTGGTGGTGC CTGAGAAGCTCTGCCCACAGTTTCTCCAGCTGGCCAGTGCCAACACTGCCCGGGGAGTAG AGACGTGTGGGATTCTCTGCGGAAAACTGATGAGGAATGAGTTCACCATTACCCACGTTC TCATCCCCAAGCAAAGTGCTGGGTCTGATTATGGCAACACTGAGAATGAAGAAGAGCTTT TCCTCATACAGGATCAGCAGGGTCTCATCACACTGGGCTGGATTCATACTCATCCCACAC AGACCGCCTTCCTCTCCAGCGTTGACCTGCACACTCACTGCTCCTACCAGATGATGTTGC CAGAGTCTATAGCCATTGTTTGTTCCCCCAAGTTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 82-201, - strand, RNAz p=0.531474 | |
| 497-616, - strand, RNAz p=0.651415 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 82-201, - strand, RNAz p=0.531474 | |
| 497-616, - strand, RNAz p=0.651415 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 3-206, gnl|bosTau2|chr11 (9458330-9458127) | |
| 3-206, gnl|canFam2|chr17 (52290441-52290228) | |
| 3-206, gnl|danRer3|chr8 (43113883-43114096) | |
| 3-206, gnl|dasNov1|scaffold_113556 (5812-6025) | |
| 3-206, gnl|echTel1|scaffold_323101 (31674-31461) | |
| 3-206, gnl|fr1|chrUn (237474171-237473959) | |
| 3-206, gnl|galGal2|chrUn (17505579-17505373) | |
| 3-206, gnl|hg17|chr2 (73969635-73969848) | |
| 3-206, gnl|Hg17|chr2 (73969639-73969842) | |
| 3-206, gnl|loxAfr1|scaffold_46748 (11512-11725) | |
| 3-206, gnl|mm7|chr6 (83595895-83595683) | |
| 3-206, gnl|Mm7|chr6 (83595890-83595687) | |
| 3-206, gnl|oryCun1|scaffold_199376 (15631-15844) | |
| 3-206, gnl|panTro1|chr12 (76371342-76371555) | |
| 3-206, gnl|rheMac2|chr13 (74045580-74045793) | |
| 3-206, gnl|rn3|chr4 (118033747-118033535) | |
| 3-206, gnl|tetNig1|chr12 (3727159-3727369) | |
| 3-206, gnl|xenTro1|scaffold_763 (574446-574235) | |
| 378-742, gnl|bosTau2|chr11 (9448464-9448101) | |
| 378-742, gnl|canFam2|chr17 (52278523-52278263) | |
| 378-742, gnl|danRer3|chr8 (43117656-43117877) | |
| 378-742, gnl|echTel1|scaffold_35692 (6675-6946) | |
| 378-742, gnl|fr1|chrUn (237473236-237472982) | |
| 378-742, gnl|galGal2|chrUn (55073436-55073179) | |
| 378-742, gnl|hg17|chr2 (73986148-73986405) | |
| 378-742, gnl|Hg17|chr2 (73986169-73986532) | |
| 378-742, gnl|loxAfr1|scaffold_6673 (27927-28186) | |
| 378-742, gnl|mm7|chr6 (83587452-83587192) | |
| 378-742, gnl|Mm7|chr6 (83587426-83587063) | |
| 378-742, gnl|oryCun1|scaffold_180288 (6706-6966) | |
| 378-742, gnl|panTro1|chr12 (76388007-76388264) | |
| 378-742, gnl|rheMac2|chr13 (74063857-74064114) | |
| 378-742, gnl|rn3|chr4 (118025479-118025219) | |
| 378-742, gnl|tetNig1|chr12 (3728112-3728372) | |
| 378-742, gnl|xenTro1|scaffold_763 (571064-570805) | |
| 866-1007, gnl|bosTau2|chr11 (9445795-9445654) | |
| 866-1007, gnl|Hg17|chr2 (73989154-73989295) | |
| 866-1007, gnl|Mm7|chr6 (83581800-83581660) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-206, gnl|bosTau2|chr11 (9458330-9458127) | |
| 3-206, gnl|canFam2|chr17 (52290441-52290228) | |
| 3-206, gnl|danRer3|chr8 (43113883-43114096) | |
| 3-206, gnl|dasNov1|scaffold_113556 (5812-6025) | |
| 3-206, gnl|echTel1|scaffold_323101 (31674-31461) | |
| 3-206, gnl|fr1|chrUn (237474171-237473959) | |
| 3-206, gnl|galGal2|chrUn (17505579-17505373) | |
| 3-206, gnl|hg17|chr2 (73969635-73969848) | |
| 3-206, gnl|Hg17|chr2 (73969639-73969842) | |
| 3-206, gnl|loxAfr1|scaffold_46748 (11512-11725) | |
| 3-206, gnl|mm7|chr6 (83595895-83595683) | |
| 3-206, gnl|Mm7|chr6 (83595890-83595687) | |
| 3-206, gnl|oryCun1|scaffold_199376 (15631-15844) | |
| 3-206, gnl|panTro1|chr12 (76371342-76371555) | |
| 3-206, gnl|rheMac2|chr13 (74045580-74045793) | |
| 3-206, gnl|rn3|chr4 (118033747-118033535) | |
| 3-206, gnl|tetNig1|chr12 (3727159-3727369) | |
| 3-206, gnl|xenTro1|scaffold_763 (574446-574235) | |
| 378-742, gnl|bosTau2|chr11 (9448464-9448101) | |
| 378-742, gnl|canFam2|chr17 (52278523-52278263) | |
| 378-742, gnl|danRer3|chr8 (43117656-43117877) | |
| 378-742, gnl|echTel1|scaffold_35692 (6675-6946) | |
| 378-742, gnl|fr1|chrUn (237473236-237472982) | |
| 378-742, gnl|galGal2|chrUn (55073436-55073179) | |
| 378-742, gnl|hg17|chr2 (73986148-73986405) | |
| 378-742, gnl|Hg17|chr2 (73986169-73986532) | |
| 378-742, gnl|loxAfr1|scaffold_6673 (27927-28186) | |
| 378-742, gnl|mm7|chr6 (83587452-83587192) | |
| 378-742, gnl|Mm7|chr6 (83587426-83587063) | |
| 378-742, gnl|oryCun1|scaffold_180288 (6706-6966) | |
| 378-742, gnl|panTro1|chr12 (76388007-76388264) | |
| 378-742, gnl|rheMac2|chr13 (74063857-74064114) | |
| 378-742, gnl|rn3|chr4 (118025479-118025219) | |
| 378-742, gnl|tetNig1|chr12 (3728112-3728372) | |
| 378-742, gnl|xenTro1|scaffold_763 (571064-570805) | |
| 866-1007, gnl|bosTau2|chr11 (9445795-9445654) | |
| 866-1007, gnl|Hg17|chr2 (73989154-73989295) | |
| 866-1007, gnl|Mm7|chr6 (83581800-83581660) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cty (0.20816) | |
| hea (0.204499) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| lnt (0.142308) | |
| eep (0.122564) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| hea (0.204499) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| lnt (0.142308) | |
| eep (0.122564) |