Ss1.1-rpigcb_11147.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATTTGGCTTTGGAAATTTACCTTTCATATACGCACCTGGGAACATGAGGGAGAGGGCA TGATCCTCACTGCACAAAAGAACAGATGACACAGCTCTGAGTTTTACACGGAGAATCTGG GCCTGCCTATGACTTGGAAATGACCTGTCTGTGATGAGAGGGGAAAGGAGTAGTTGAGAA GGAAACAATGTTCTATTCGCCAGTTTTCTCAAAAGGAAACTTTACCCCCAGCACATGCTA AATGGAAACTGTGGCTATTTTCCGAAAGCTTTTAATATTACTGAGTGCTCCATATTGTCA CTCAGTTTTAAATGCCACCACTAGGGGAAAGAGAAACTATTGAAGAAATAATTGTTTAAT ATATTTGCAGTGGGGTAGAAGAAATAAATAAATCTAGTATATTAGTTCATATACTAGTAA AGTCATCTGGAATTTATTGTGATGTTAGGTGGAAGTTCCGTCATGTTATCCAAGATACAG ACTTAGTCTTTGTTTAAATCTGAGTTATCATGACAATTTTTAGTTGATTACTCGTGTTTC TTTTTATTTTTTTTTATTTTATTTTTTACTCATGTTTCTTAACCCACTCTTTAATTTTCT TCGTATTGCAATACTCTTCAGCTATCTCTTGGAAATTAGAAGAACATGAGAAATTTGAAT AAGTGAGAGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATTTGGCTTTGGAAATTTACCTTTCATATACGCACCTGGGAACATGAGGGAGAGGGCA TGATCCTCACTGCACAAAAGAACAGATGACACAGCTCTGAGTTTTACACGGAGAATCTGG GCCTGCCTATGACTTGGAAATGACCTGTCTGTGATGAGAGGGGAAAGGAGTAGTTGAGAA GGAAACAATGTTCTATTCGCCAGTTTTCTCAAAAGGAAACTTTACCCCCAGCACATGCTA AATGGAAACTGTGGCTATTTTCCGAAAGCTTTTAATATTACTGAGTGCTCCATATTGTCA CTCAGTTTTAAATGCCACCACTAGGGGAAAGAGAAACTATTGAAGAAATAATTGTTTAAT ATATTTGCAGTGGGGTAGAAGAAATAAATAAATCTAGTATATTAGTTCATATACTAGTAA AGTCATCTGGAATTTATTGTGATGTTAGGTGGAAGTTCCGTCATGTTATCCAAGATACAG ACTTAGTCTTTGTTTAAATCTGAGTTATCATGACAATTTTTAGTTGATTACTCGTGTTTC TTTTTATTTTTTTTTATTTTATTTTTTACTCATGTTTCTTAACCCACTCTTTAATTTTCT TCGTATTGCAATACTCTTCAGCTATCTCTTGGAAATTAGAAGAACATGAGAAATTTGAAT AAGTGAGAGAAG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 320-463, - strand, RNAz p=0.999852 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 320-463, - strand, RNAz p=0.999852 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 4-550, gnl|bosTau2|chr3 (31189359-31189930) | |
| 4-550, gnl|canFam2|chr6 (45757299-45756597) | |
| 4-550, gnl|canFam2|chr6 (45757299-45756597) | |
| 4-550, gnl|echTel1|scaffold_287107 (46612-47295) | |
| 4-550, gnl|echTel1|scaffold_287107 (46612-47295) | |
| 4-550, gnl|hg17|chr1 (109349600-109350284) | |
| 4-550, gnl|Hg17|chr1 (109349664-109350250) | |
| 4-550, gnl|hg17|chr1_random (130888-131572) | |
| 4-550, gnl|loxAfr1|scaffold_36576 (2340-3015) | |
| 4-550, gnl|loxAfr1|scaffold_36576 (2340-3015) | |
| 4-550, gnl|mm7|chr3 (108376531-108375895) | |
| 4-550, gnl|mm7|chr3 (108376531-108375895) | |
| 4-550, gnl|Mm7|chr3 (108376456-108375915) | |
| 4-550, gnl|monDom2|scaffold_0 (7617730-7617094) | |
| 4-550, gnl|monDom2|scaffold_0 (7617730-7617094) | |
| 4-550, gnl|oryCun1|scaffold_174905 (5127-5764) | |
| 4-550, gnl|oryCun1|scaffold_174905 (5127-5764) | |
| 4-550, gnl|panTro1|chrUn_random (63748636-63749320) | |
| 4-550, gnl|panTro1|chrUn_random (63748636-63749320) | |
| 4-550, gnl|rheMac2|chr1 (112150712-112151388) | |
| 4-550, gnl|rheMac2|chr1 (112150712-112151388) | |
| 4-550, gnl|rn3|chr2 (204088113-204087495) | |
| 4-550, gnl|rn3|chr2 (204088113-204087495) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-550, gnl|bosTau2|chr3 (31189359-31189930) | |
| 4-550, gnl|canFam2|chr6 (45757299-45756597) | |
| 4-550, gnl|canFam2|chr6 (45757299-45756597) | |
| 4-550, gnl|echTel1|scaffold_287107 (46612-47295) | |
| 4-550, gnl|echTel1|scaffold_287107 (46612-47295) | |
| 4-550, gnl|hg17|chr1 (109349600-109350284) | |
| 4-550, gnl|Hg17|chr1 (109349664-109350250) | |
| 4-550, gnl|hg17|chr1_random (130888-131572) | |
| 4-550, gnl|loxAfr1|scaffold_36576 (2340-3015) | |
| 4-550, gnl|loxAfr1|scaffold_36576 (2340-3015) | |
| 4-550, gnl|mm7|chr3 (108376531-108375895) | |
| 4-550, gnl|mm7|chr3 (108376531-108375895) | |
| 4-550, gnl|Mm7|chr3 (108376456-108375915) | |
| 4-550, gnl|monDom2|scaffold_0 (7617730-7617094) | |
| 4-550, gnl|monDom2|scaffold_0 (7617730-7617094) | |
| 4-550, gnl|oryCun1|scaffold_174905 (5127-5764) | |
| 4-550, gnl|oryCun1|scaffold_174905 (5127-5764) | |
| 4-550, gnl|panTro1|chrUn_random (63748636-63749320) | |
| 4-550, gnl|panTro1|chrUn_random (63748636-63749320) | |
| 4-550, gnl|rheMac2|chr1 (112150712-112151388) | |
| 4-550, gnl|rheMac2|chr1 (112150712-112151388) | |
| 4-550, gnl|rn3|chr2 (204088113-204087495) | |
| 4-550, gnl|rn3|chr2 (204088113-204087495) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cty (0.5204) | |
| ova (0.129132) | |
| bla (0.124347) | |
| ebs (0.118301) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.5204) | |
| ova (0.129132) | |
| bla (0.124347) | |
| ebs (0.118301) |