Ss1.1-rpigcb_11161.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCCTCCTGGGCTTCGGAGCGCCGCAGCCATGTCTTATCCCGCTGATGATTATGAGTCG GAGACTGCTTATGATCCCTATGCTTACCCGGGCGACTATGATATGCACACAGGCGATCCG AAGCAGGATCTGGCTTATGAACGTCAGTATGAGCAGCAGACCTATCAGGTGATCCCCGAA GTGATCAAAAACTTCATCCAGTATTTCCACAAAACTGTGTCGGACTTGATTGACCAGAAG GTGTATGAACTACAGGCCAGTCGCGTGTCCAGCGATGTCATTGACCAGAAGGTGTATGAG ATCCAGGACATCTATGAGAACAGCTGGACCAAGTTGACTGAAAGATTCTTCAAGAATACC CCTTGGCCTGAGGCTGAAACCATTGCTCCGCAGGTTGGCAACGATGCTGTTTTCCTGATT TTGTACAAAGAATTATACTACAGGCACATTTATGCCAAAGTCAGCGGGGGACCCTCCTTG GAGCAGAGGTTTGAATCCTATTACAACTACTGCAATCTCTTCAACTACATTCTCAATGCT GATGGTCCTGCTCCGCTCGAACTACCCAACCAGTGGCTCTGGGACATCATAGATGAGTTC ATCTACCAGTTTCAGTCGTTCAGTCAGTACCGCTGCAAGACCGCCAAGAAGTCGGAGGAG GAGATTGACTTCCTTCGTTCCAATCCCAAAATCTGGAACGTCCACAGTGTCCTCAACGTC CTTCACTCCCTAGTGGACAAGTCCAACATCAACCGGCAGCTGGAGGTGTACACGAGCGGA GGTGACCCTGAGAGTGTGGCTGGGGAGTATGGGCGGCACTCCCTCTACAAGATGCTCGGC TACTTCAGCCTGGTGGGCCTTCTGCGTCTGCACTCCCTGTTGGGGGATTACTACCAGGCC ATCAAGGTGCTGGAGAACATCGAACTCAACAAGAAGAGCATGTATTCCCGGGTGCCCGAG TGCCAGGTGACCACTTACTACTACGTCGGGTTTGCGTATTTGATGATGCGTCGCTACCAG GATGCCATCCGGGTCTTTGCCAACATCCTCCTCTACATCCAGAGGACCAAGAGCATGTTC CAGAGGACCACGTACAAGTACGAGATGATTAACAAGCAGAACGAGCAGATGCACGCGCTG CTGGCCATCGCCCTCACCATGTACCCCATGCGCATCGATGAGAGCATTCACCTCCAGCTG CGGGAGAAGTACGGGGACAAGATGCTGCGCATGCAGAAGGGGGACCCGCAGGTCTACGAG GAGCTTTTCAGCTACTCCTGCCCCAAGTTCCTGTCGCCCGTCGTGCCCAACTACGACAAC GTGCACCCCAATTACCACAAGGAGCCCTTCCTGCAGCAGCTGAAGGTCTTCTCCGACGAG GTGCAGCAGCAGGCCCAGCTCTCGACCATCCGCAGCTTCCTCAAGCTCTACACCACCATG CCCGTGGCCAAGCTGGCCGGCTTCCTGGACCTCACCGAGCAGGAGTTCCGGATCCAGCTC CTGGTCTTCAAACACAAAATGAAGAACCTGGTGTGGACCAGCGGCATCTCCGCCCTCGAT GGCGAATTCCAGTCGGCCTCCGAGGTTGACTTCTACATCGATAAGGACATGATCCACATC GCAGACACCAAGGTTGCCAGGCGCTATGGGGACTTCTTCATCCGACAGATTCACAAATTT GAAGAGCTCAATCGAACCCTGAAGAAGATGGGGCAGAGACCCTGAGTGCAGTGGCACCTG CCTTACTCAGGAGCCTCGTTTGCTGTCATCCTGGGGGAGTGTGTCTGCCACCACGGAGCC TTTACCTCGCACAGCCGTCGGCCAGTCAGCTGAGTTGCAGCTTATTGGAATCACAGACTG AAATGTTTTAAATAGGTCCCAATAAAAGGATCTTTTTTGGAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCCTCCTGGGCTTCGGAGCGCCGCAGCCATGTCTTATCCCGCTGATGATTATGAGTCG GAGACTGCTTATGATCCCTATGCTTACCCGGGCGACTATGATATGCACACAGGCGATCCG AAGCAGGATCTGGCTTATGAACGTCAGTATGAGCAGCAGACCTATCAGGTGATCCCCGAA GTGATCAAAAACTTCATCCAGTATTTCCACAAAACTGTGTCGGACTTGATTGACCAGAAG GTGTATGAACTACAGGCCAGTCGCGTGTCCAGCGATGTCATTGACCAGAAGGTGTATGAG ATCCAGGACATCTATGAGAACAGCTGGACCAAGTTGACTGAAAGATTCTTCAAGAATACC CCTTGGCCTGAGGCTGAAACCATTGCTCCGCAGGTTGGCAACGATGCTGTTTTCCTGATT TTGTACAAAGAATTATACTACAGGCACATTTATGCCAAAGTCAGCGGGGGACCCTCCTTG GAGCAGAGGTTTGAATCCTATTACAACTACTGCAATCTCTTCAACTACATTCTCAATGCT GATGGTCCTGCTCCGCTCGAACTACCCAACCAGTGGCTCTGGGACATCATAGATGAGTTC ATCTACCAGTTTCAGTCGTTCAGTCAGTACCGCTGCAAGACCGCCAAGAAGTCGGAGGAG GAGATTGACTTCCTTCGTTCCAATCCCAAAATCTGGAACGTCCACAGTGTCCTCAACGTC CTTCACTCCCTAGTGGACAAGTCCAACATCAACCGGCAGCTGGAGGTGTACACGAGCGGA GGTGACCCTGAGAGTGTGGCTGGGGAGTATGGGCGGCACTCCCTCTACAAGATGCTCGGC TACTTCAGCCTGGTGGGCCTTCTGCGTCTGCACTCCCTGTTGGGGGATTACTACCAGGCC ATCAAGGTGCTGGAGAACATCGAACTCAACAAGAAGAGCATGTATTCCCGGGTGCCCGAG TGCCAGGTGACCACTTACTACTACGTCGGGTTTGCGTATTTGATGATGCGTCGCTACCAG GATGCCATCCGGGTCTTTGCCAACATCCTCCTCTACATCCAGAGGACCAAGAGCATGTTC CAGAGGACCACGTACAAGTACGAGATGATTAACAAGCAGAACGAGCAGATGCACGCGCTG CTGGCCATCGCCCTCACCATGTACCCCATGCGCATCGATGAGAGCATTCACCTCCAGCTG CGGGAGAAGTACGGGGACAAGATGCTGCGCATGCAGAAGGGGGACCCGCAGGTCTACGAG GAGCTTTTCAGCTACTCCTGCCCCAAGTTCCTGTCGCCCGTCGTGCCCAACTACGACAAC GTGCACCCCAATTACCACAAGGAGCCCTTCCTGCAGCAGCTGAAGGTCTTCTCCGACGAG GTGCAGCAGCAGGCCCAGCTCTCGACCATCCGCAGCTTCCTCAAGCTCTACACCACCATG CCCGTGGCCAAGCTGGCCGGCTTCCTGGACCTCACCGAGCAGGAGTTCCGGATCCAGCTC CTGGTCTTCAAACACAAAATGAAGAACCTGGTGTGGACCAGCGGCATCTCCGCCCTCGAT GGCGAATTCCAGTCGGCCTCCGAGGTTGACTTCTACATCGATAAGGACATGATCCACATC GCAGACACCAAGGTTGCCAGGCGCTATGGGGACTTCTTCATCCGACAGATTCACAAATTT GAAGAGCTCAATCGAACCCTGAAGAAGATGGGGCAGAGACCCTGAGTGCAGTGGCACCTG CCTTACTCAGGAGCCTCGTTTGCTGTCATCCTGGGGGAGTGTGTCTGCCACCACGGAGCC TTTACCTCGCACAGCCGTCGGCCAGTCAGCTGAGTTGCAGCTTATTGGAATCACAGACTG AAATGTTTTAAATAGGTCCCAATAAAAGGATCTTTTTTGGAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1186-1305, - strand, RNAz p=0.697652 | |
| 1426-1545, - strand, RNAz p=0.67936 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1186-1305, - strand, RNAz p=0.697652 | |
| 1426-1545, - strand, RNAz p=0.67936 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 111-349, gnl|bosTau2|chr5 (67133088-67132850) | |
| 111-349, gnl|canFam2|chr10 (29855647-29855417) | |
| 111-349, gnl|danRer3|chr19 (38239114-38239338) | |
| 111-349, gnl|dasNov1|scaffold_9137 (11306-11077) | |
| 111-349, gnl|echTel1|scaffold_193667 (4183-4413) | |
| 111-349, gnl|fr1|chrUn (170523261-170523491) | |
| 111-349, gnl|galGal2|chr1 (47807668-47807438) | |
| 111-349, gnl|hg17|chr22 (36571781-36572011) | |
| 111-349, gnl|Hg17|chr22 (36571785-36572023) | |
| 111-349, gnl|loxAfr1|scaffold_7315 (49694-49924) | |
| 111-349, gnl|mm7|chr15 (79159777-79160003) | |
| 111-349, gnl|Mm7|chr15 (79159781-79160012) | |
| 111-349, gnl|monDom2|scaffold_297 (103174-102951) | |
| 111-349, gnl|oryCun1|scaffold_128705 (5661-5431) | |
| 111-349, gnl|panTro1|chr23 (36751834-36752064) | |
| 111-349, gnl|rheMac2|chr10 (81783251-81783481) | |
| 111-349, gnl|rn3|chr7 (117088864-117089093) | |
| 111-349, gnl|tetNig1|chr17 (1102853-1103075) | |
| 111-349, gnl|xenTro1|scaffold_246 (434538-434757) | |
| 607-785, gnl|bosTau2|chr5 (67125345-67125167) | |
| 607-785, gnl|canFam2|chr10 (29839522-29839395) | |
| 607-785, gnl|danRer3|chr19 (38244164-38244291) | |
| 607-785, gnl|dasNov1|scaffold_9137 (1542-1419) | |
| 607-785, gnl|echTel1|scaffold_250628 (1478-1353) | |
| 607-785, gnl|fr1|chrUn (170524263-170524390) | |
| 607-785, gnl|galGal2|chr1 (47803478-47803351) | |
| 607-785, gnl|hg17|chr22 (36590670-36590797) | |
| 607-785, gnl|Hg17|chr22 (36590680-36590858) | |
| 607-785, gnl|loxAfr1|scaffold_26966 (40077-40202) | |
| 607-785, gnl|mm7|chr15 (79167054-79167178) | |
| 607-785, gnl|Mm7|chr15 (79167061-79167239) | |
| 607-785, gnl|monDom2|scaffold_297 (97344-97217) | |
| 607-785, gnl|oryCun1|scaffold_161929 (1974-2098) | |
| 607-785, gnl|panTro1|chr23 (36771471-36771598) | |
| 607-785, gnl|rheMac2|chr10 (81803089-81803216) | |
| 607-785, gnl|rn3|chr7 (117097068-117097192) | |
| 607-785, gnl|tetNig1|chr17 (1103850-1103974) | |
| 607-785, gnl|xenTro1|scaffold_246 (438319-438451) | |
| 1107-1606, gnl|bosTau2|chr5 (67121551-67121052) | |
| 1107-1606, gnl|Hg17|chr22 (36598180-36598679) | |
| 1107-1606, gnl|Mm7|chr15 (79172415-79172914) | |
| 1685-1901, gnl|bosTau2|chr5 (67115810-67115597) | |
| 1685-1901, gnl|Hg17|chr22 (36608931-36609132) | |
| 1685-1901, gnl|Mm7|chr15 (79177151-79177352) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 111-349, gnl|bosTau2|chr5 (67133088-67132850) | |
| 111-349, gnl|canFam2|chr10 (29855647-29855417) | |
| 111-349, gnl|danRer3|chr19 (38239114-38239338) | |
| 111-349, gnl|dasNov1|scaffold_9137 (11306-11077) | |
| 111-349, gnl|echTel1|scaffold_193667 (4183-4413) | |
| 111-349, gnl|fr1|chrUn (170523261-170523491) | |
| 111-349, gnl|galGal2|chr1 (47807668-47807438) | |
| 111-349, gnl|hg17|chr22 (36571781-36572011) | |
| 111-349, gnl|Hg17|chr22 (36571785-36572023) | |
| 111-349, gnl|loxAfr1|scaffold_7315 (49694-49924) | |
| 111-349, gnl|mm7|chr15 (79159777-79160003) | |
| 111-349, gnl|Mm7|chr15 (79159781-79160012) | |
| 111-349, gnl|monDom2|scaffold_297 (103174-102951) | |
| 111-349, gnl|oryCun1|scaffold_128705 (5661-5431) | |
| 111-349, gnl|panTro1|chr23 (36751834-36752064) | |
| 111-349, gnl|rheMac2|chr10 (81783251-81783481) | |
| 111-349, gnl|rn3|chr7 (117088864-117089093) | |
| 111-349, gnl|tetNig1|chr17 (1102853-1103075) | |
| 111-349, gnl|xenTro1|scaffold_246 (434538-434757) | |
| 607-785, gnl|bosTau2|chr5 (67125345-67125167) | |
| 607-785, gnl|canFam2|chr10 (29839522-29839395) | |
| 607-785, gnl|danRer3|chr19 (38244164-38244291) | |
| 607-785, gnl|dasNov1|scaffold_9137 (1542-1419) | |
| 607-785, gnl|echTel1|scaffold_250628 (1478-1353) | |
| 607-785, gnl|fr1|chrUn (170524263-170524390) | |
| 607-785, gnl|galGal2|chr1 (47803478-47803351) | |
| 607-785, gnl|hg17|chr22 (36590670-36590797) | |
| 607-785, gnl|Hg17|chr22 (36590680-36590858) | |
| 607-785, gnl|loxAfr1|scaffold_26966 (40077-40202) | |
| 607-785, gnl|mm7|chr15 (79167054-79167178) | |
| 607-785, gnl|Mm7|chr15 (79167061-79167239) | |
| 607-785, gnl|monDom2|scaffold_297 (97344-97217) | |
| 607-785, gnl|oryCun1|scaffold_161929 (1974-2098) | |
| 607-785, gnl|panTro1|chr23 (36771471-36771598) | |
| 607-785, gnl|rheMac2|chr10 (81803089-81803216) | |
| 607-785, gnl|rn3|chr7 (117097068-117097192) | |
| 607-785, gnl|tetNig1|chr17 (1103850-1103974) | |
| 607-785, gnl|xenTro1|scaffold_246 (438319-438451) | |
| 1107-1606, gnl|bosTau2|chr5 (67121551-67121052) | |
| 1107-1606, gnl|Hg17|chr22 (36598180-36598679) | |
| 1107-1606, gnl|Mm7|chr15 (79172415-79172914) | |
| 1685-1901, gnl|bosTau2|chr5 (67115810-67115597) | |
| 1685-1901, gnl|Hg17|chr22 (36608931-36609132) | |
| 1685-1901, gnl|Mm7|chr15 (79177151-79177352) |
| Expressed library(ies): 49 entry(ies) | More info |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
| cga (1.11638) | |
| cty (0.832639) | |
| elu (0.770713) | |
| cli (0.611247) | |
| cag (0.604778) | |
| ecc (0.575175) | |
| nep (0.551775) | |
| mcp (0.511945) | |
| cly (0.482567) | |
| clu (0.478583) | |
| nca (0.410621) | |
| nmm (0.398406) | |
| cov (0.396458) | |
| fcc (0.39557) | |
| cbr (0.383926) | |
| nlu (0.383362) | |
| ese (0.379507) | |
| eep (0.367692) | |
| cut (0.339847) | |
| nco (0.323468) | |
| csp (0.322373) | |
| spl (0.286369) | |
| pty (0.285429) | |
| lnt (0.284616) | |
| csk (0.281492) | |
| sug (0.254582) | |
| bla (0.248694) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| fli (0.202881) | |
| sto (0.179824) | |
| ill (0.175593) | |
| ton (0.1755) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| cst (0.140036) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cbl (0.114797) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (1.11638) | |
| cty (0.832639) | |
| elu (0.770713) | |
| cli (0.611247) | |
| cag (0.604778) | |
| ecc (0.575175) | |
| nep (0.551775) | |
| mcp (0.511945) | |
| cly (0.482567) | |
| clu (0.478583) | |
| nca (0.410621) | |
| nmm (0.398406) | |
| cov (0.396458) | |
| fcc (0.39557) | |
| cbr (0.383926) | |
| nlu (0.383362) | |
| ese (0.379507) | |
| eep (0.367692) | |
| cut (0.339847) | |
| nco (0.323468) | |
| csp (0.322373) | |
| spl (0.286369) | |
| pty (0.285429) | |
| lnt (0.284616) | |
| csk (0.281492) | |
| sug (0.254582) | |
| bla (0.248694) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| fli (0.202881) | |
| sto (0.179824) | |
| ill (0.175593) | |
| ton (0.1755) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| cst (0.140036) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cbl (0.114797) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |