Non-Coding RNA Search

Ss1.1-rpigcb_11168.5

Sequence:


               
               ACCCGGCCCAGCCCGCACCCTCACACTGATTGCCAAAGTCATCCAGAACCTCGCCAACTG
TGCTCCGTTTGGTGAGAAAGAGGCCTACATGAGCTTCATGAATAGCTTCCTGGAGGACCA
TGGACCTGCCATGCAACGCTTCCTGGATCAAGTGGCCATGGTGGATGTGGACACAGCACC
CAGTGGTTACCAGGGCAGCAGTGACCTGGCCCTCCAGCTGGCAGTCCTGCATGCCCAGCT
GTGTACCATCTTTGCTGAGCTTGACCAGGCAACCCGTGACAGCCTGGAACCACTGCCCAC
AATCCTGCATGCCATTGAGGAGGGCCGACCTGTACCTGTGTCCGTGCCAATGCGTCTCCC
ACCACCTCCAGTCCAGGTCCACTCCAGCTTTTCTGCAGGGGAGAAGCCTGGCTTCCTGGC
CCCCCGGGACCTCCCCAAGCATACCCCTCTCATCTCCAAGAGCCAGTCCCTGCGCAGCGT
TCACGGCGCAGGTAGTTGGGCCCGGCCACGGCCAGATGAGGAGCAGGCTCCGCGGCTGCC
CCGGCCAGTGCAGCGCACACAGAGCGTCCCGGCTGGTCGCCCCGCTCGCCGCCGCCCGTC
TTCAGGGCCCCGGCCGCGACCCAAAGGCTCCCTACGCACGGGACCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCGGCCCAGCCCGCACCCTCACACTGATTGCCAAAGTCATCCAGAACCTCGCCAACTG
TGCTCCGTTTGGTGAGAAAGAGGCCTACATGAGCTTCATGAATAGCTTCCTGGAGGACCA
TGGACCTGCCATGCAACGCTTCCTGGATCAAGTGGCCATGGTGGATGTGGACACAGCACC
CAGTGGTTACCAGGGCAGCAGTGACCTGGCCCTCCAGCTGGCAGTCCTGCATGCCCAGCT
GTGTACCATCTTTGCTGAGCTTGACCAGGCAACCCGTGACAGCCTGGAACCACTGCCCAC
AATCCTGCATGCCATTGAGGAGGGCCGACCTGTACCTGTGTCCGTGCCAATGCGTCTCCC
ACCACCTCCAGTCCAGGTCCACTCCAGCTTTTCTGCAGGGGAGAAGCCTGGCTTCCTGGC
CCCCCGGGACCTCCCCAAGCATACCCCTCTCATCTCCAAGAGCCAGTCCCTGCGCAGCGT
TCACGGCGCAGGTAGTTGGGCCCGGCCACGGCCAGATGAGGAGCAGGCTCCGCGGCTGCC
CCGGCCAGTGCAGCGCACACAGAGCGTCCCGGCTGGTCGCCCCGCTCGCCGCCGCCCGTC
TTCAGGGCCCCGGCCGCGACCCAAAGGCTCCCTACGCACGGGACCCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H735_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H735_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               106-225, + strand, RNAz p=0.68332

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-225, + strand, RNAz p=0.68332

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK024488, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK024488, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               67-269, gnl|bosTau2|chr7 (6876570-6876772)
               

               
               67-269, gnl|Hg17|chr19 (15426373-15426171)
               

               
               67-269, gnl|Mm7|chr17 (30588970-30588768)
               


               
               384-646, gnl|bosTau2|chr7 (6878027-6878289)
               

               
               384-646, gnl|Hg17|chr19 (15425312-15425050)
               

               
               384-646, gnl|Mm7|chr17 (30587820-30587558)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-269, gnl|bosTau2|chr7 (6876570-6876772)
               

               
               67-269, gnl|Hg17|chr19 (15426373-15426171)
               

               
               67-269, gnl|Mm7|chr17 (30588970-30588768)
               


               
               384-646, gnl|bosTau2|chr7 (6878027-6878289)
               

               
               384-646, gnl|Hg17|chr19 (15425312-15425050)
               

               
               384-646, gnl|Mm7|chr17 (30587820-30587558)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cty (0.20816)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)

	67-269, gnl\|bosTau2\|chr7 (6876570-6876772)
	67-269, gnl\|Hg17\|chr19 (15426373-15426171)
	67-269, gnl\|Mm7\|chr17 (30588970-30588768)

	384-646, gnl\|bosTau2\|chr7 (6878027-6878289)
	384-646, gnl\|Hg17\|chr19 (15425312-15425050)
	384-646, gnl\|Mm7\|chr17 (30587820-30587558)