Ss1.1-rpigcb_11357.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATCAGTTCATTACAAATGAAACTGATGGAAATGAAAGAACTGGAAAACAATAATAATC AATCAAATTGGTGCAGTAGCCCACACAGCATTCTTGTAAATGGCACTACAGATTATTGCA GCCTCAGCACCAGCAGCAGTGAAACAGCCAATCTTAATGAGCACGCTGAAGGCCAGAGCA ACCTAGAGTCTGAGCCCATACATCAGGAGTCCCCAGCAAGAAGTAGTCCTGAAATACTGC CTTCTGGTGTGACTGATGAAAACGAAGTGGTGACTGCAACTGTTAATGAAAAAGTTTGTC CTGAATTTAATAGTGACGGACATTCAAAAGAGGAAGATCCATTTAATGTAGAATCAAGTT CACTGACAAATCCAGTTGCAGATTCAAACTTGGATTTTTTCCAGTCTGATCCTTTTGTTG GCAGTGATCCTTTCAAGGATGATCCTTTTGGGAAAATTGATCCATTTGGAGGTGATCCTT TCAAAGGTTCAGATCCATTTGCATCCGACTGTTTCTTCAAACAATCTTCTACTGACCCTT TTGCAACTTCAAGTACTGACCCTTTCAGTGTGGCCAGCAATAGTACCACATCGGTAGAAA CATTAAAGCACAATGATCCTTTTGCTCCTGGTGGAACAGTTGTTGTTGCAGCAAGCGATT CAGCCACAGACCCCTTTGCTTCTGTTTTCGGAAGTGAGTCATTTGAAGGTGGATTTGCCG ACTTCAGCACATTGTCAAAGGTCAACAATGAAGATCCTTTTAGTTCAGCCACATCAAGCT CTGTCGGCACTGTGGTCCTTACAAAAAATGTACTTGAGGAAGCATCTGTCAAAAGTGAAG ATGTACCCCCAGCACTGCCACCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATCAGTTCATTACAAATGAAACTGATGGAAATGAAAGAACTGGAAAACAATAATAATC AATCAAATTGGTGCAGTAGCCCACACAGCATTCTTGTAAATGGCACTACAGATTATTGCA GCCTCAGCACCAGCAGCAGTGAAACAGCCAATCTTAATGAGCACGCTGAAGGCCAGAGCA ACCTAGAGTCTGAGCCCATACATCAGGAGTCCCCAGCAAGAAGTAGTCCTGAAATACTGC CTTCTGGTGTGACTGATGAAAACGAAGTGGTGACTGCAACTGTTAATGAAAAAGTTTGTC CTGAATTTAATAGTGACGGACATTCAAAAGAGGAAGATCCATTTAATGTAGAATCAAGTT CACTGACAAATCCAGTTGCAGATTCAAACTTGGATTTTTTCCAGTCTGATCCTTTTGTTG GCAGTGATCCTTTCAAGGATGATCCTTTTGGGAAAATTGATCCATTTGGAGGTGATCCTT TCAAAGGTTCAGATCCATTTGCATCCGACTGTTTCTTCAAACAATCTTCTACTGACCCTT TTGCAACTTCAAGTACTGACCCTTTCAGTGTGGCCAGCAATAGTACCACATCGGTAGAAA CATTAAAGCACAATGATCCTTTTGCTCCTGGTGGAACAGTTGTTGTTGCAGCAAGCGATT CAGCCACAGACCCCTTTGCTTCTGTTTTCGGAAGTGAGTCATTTGAAGGTGGATTTGCCG ACTTCAGCACATTGTCAAAGGTCAACAATGAAGATCCTTTTAGTTCAGCCACATCAAGCT CTGTCGGCACTGTGGTCCTTACAAAAAATGTACTTGAGGAAGCATCTGTCAAAAGTGAAG ATGTACCCCCAGCACTGCCACCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 15-133, - strand, RNAz p=0.508111 | |
| 459-577, - strand, RNAz p=0.768118 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 15-133, - strand, RNAz p=0.508111 | |
| 459-577, - strand, RNAz p=0.768118 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 15-216, gnl|bosTau2|chr3 (64407480-64407681) | |
| 15-216, gnl|canFam2|chr15 (12864560-12864307) | |
| 15-216, gnl|echTel1|scaffold_233647 (3127-3380) | |
| 15-216, gnl|galGal2|chr8 (24319252-24319495) | |
| 15-216, gnl|hg17|chr1 (51583567-51583820) | |
| 15-216, gnl|Hg17|chr1 (51583798-51583597) | |
| 15-216, gnl|loxAfr1|scaffold_21904 (17112-17360) | |
| 15-216, gnl|mm7|chr4 (108739849-108739601) | |
| 15-216, gnl|Mm7|chr4 (108739621-108739819) | |
| 15-216, gnl|monDom2|scaffold_70 (2147096-2146871) | |
| 15-216, gnl|panTro1|chr1 (49795141-49795394) | |
| 15-216, gnl|rheMac2|chr1 (54219116-54219369) | |
| 15-216, gnl|rn3|chr5 (130721472-130721224) | |
| 15-216, gnl|xenTro1|scaffold_816 (134476-134232) | |
| 459-595, gnl|bosTau2|chr3 (64414845-64414984) | |
| 459-595, gnl|Hg17|chr1 (51576859-51576723) | |
| 459-595, gnl|Mm7|chr4 (108746980-108747119) | |
| 744-864, gnl|bosTau2|chr3 (67177730-67177850) | |
| 744-864, gnl|canFam2|chr15 (12895823-12895646) | |
| 744-864, gnl|dasNov1|scaffold_148897 (1783-1925) | |
| 744-864, gnl|echTel1|scaffold_317459 (93587-93410) | |
| 744-864, gnl|galGal2|chr8 (24312895-24313072) | |
| 744-864, gnl|hg17|chr1 (51541572-51541749) | |
| 744-864, gnl|Hg17|chr1 (51541718-51541598) | |
| 744-864, gnl|mm7|chr4 (108756457-108756280) | |
| 744-864, gnl|Mm7|chr4 (108756309-108756429) | |
| 744-864, gnl|monDom2|scaffold_70 (2159937-2159763) | |
| 744-864, gnl|panTro1|chr1 (49752872-49753048) | |
| 744-864, gnl|rheMac2|chr1 (54189477-54189654) | |
| 744-864, gnl|rn3|chr5 (130737415-130737238) | |
| 744-864, gnl|xenTro1|scaffold_816 (141949-141793) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 15-216, gnl|bosTau2|chr3 (64407480-64407681) | |
| 15-216, gnl|canFam2|chr15 (12864560-12864307) | |
| 15-216, gnl|echTel1|scaffold_233647 (3127-3380) | |
| 15-216, gnl|galGal2|chr8 (24319252-24319495) | |
| 15-216, gnl|hg17|chr1 (51583567-51583820) | |
| 15-216, gnl|Hg17|chr1 (51583798-51583597) | |
| 15-216, gnl|loxAfr1|scaffold_21904 (17112-17360) | |
| 15-216, gnl|mm7|chr4 (108739849-108739601) | |
| 15-216, gnl|Mm7|chr4 (108739621-108739819) | |
| 15-216, gnl|monDom2|scaffold_70 (2147096-2146871) | |
| 15-216, gnl|panTro1|chr1 (49795141-49795394) | |
| 15-216, gnl|rheMac2|chr1 (54219116-54219369) | |
| 15-216, gnl|rn3|chr5 (130721472-130721224) | |
| 15-216, gnl|xenTro1|scaffold_816 (134476-134232) | |
| 459-595, gnl|bosTau2|chr3 (64414845-64414984) | |
| 459-595, gnl|Hg17|chr1 (51576859-51576723) | |
| 459-595, gnl|Mm7|chr4 (108746980-108747119) | |
| 744-864, gnl|bosTau2|chr3 (67177730-67177850) | |
| 744-864, gnl|canFam2|chr15 (12895823-12895646) | |
| 744-864, gnl|dasNov1|scaffold_148897 (1783-1925) | |
| 744-864, gnl|echTel1|scaffold_317459 (93587-93410) | |
| 744-864, gnl|galGal2|chr8 (24312895-24313072) | |
| 744-864, gnl|hg17|chr1 (51541572-51541749) | |
| 744-864, gnl|Hg17|chr1 (51541718-51541598) | |
| 744-864, gnl|mm7|chr4 (108756457-108756280) | |
| 744-864, gnl|Mm7|chr4 (108756309-108756429) | |
| 744-864, gnl|monDom2|scaffold_70 (2159937-2159763) | |
| 744-864, gnl|panTro1|chr1 (49752872-49753048) | |
| 744-864, gnl|rheMac2|chr1 (54189477-54189654) | |
| 744-864, gnl|rn3|chr5 (130737415-130737238) | |
| 744-864, gnl|xenTro1|scaffold_816 (141949-141793) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cty (0.10408) |