Non-Coding RNA Search

Ss1.1-rpigcb_1140.5

Sequence:


               
               GAGTATTCTGGAATCTAGTTAGTTAGGTTTAAAATAAACCTTGAATGTTAAGAAGTTGTA
GCCATCTGAGAGAAAAATCCAAAATGACTGAAAATGTAGACTCTGTCCAAGTGCATGTTA
CTACTTAAATTAGTCTTTCTGCTGGAATCCAAGGAGTATGTATGCCCCCTTGTGGTTAAC
TATTGCTCCTTTCATAATTTTTTACTTGAAATCATCCGCAATTGTTTCATAACTTTAACA
GTGTTTTGGAACTACACTTTTTTAATTTAAAAGTCTTTCCCCCTCCCCCATGCCATATAA
TTTGGGTGAGAACTATAAATTTGGGCATGTCTTTGCCTTGTAAATAGATTTCTGCTGGGG
AATCTTCTTGGCTGTTCTGGAAATGCTTTCCCAAAGCTGGGAAACTGTTCTAGCTTTAGA
TGGAAATTTTTATTCATCACAGACCCTAAATTTTATGTCCAAATTATAGTAAATCATTAA
ATATTGGTTTATGGTGCTTTTTTTTTTCTCTTAACTTGAAGGCATCTGAGGTCCCAAAGT
CTTCAAATTTCTTGGATTAAGAGAAAATAGAGTATAATAGCCTTTTAAGCATACGTACAT
AAAACACCAATGAAAATTAGGAGATCGACTCTGTTACTGTTTCAGTGTATTTTATTTGAA
ATACTCTATAAAATAGTTATAATGGAATTATAATGTTCAGTGGCACTTGAACCATTTTTT
TTAAAATTTTGCCAATAGTCAAAATAAGTAGGTACTTTTACTTATAAGTTTTTATTTTCT
GCTAAGCATTAACATTTCAGCATATAATAAACTAGGGTCTGATGACCTTTTCTGACTTGT
AGCAAATACTGCTATTTTTCAAAGTACCAAAATATACATCTAAGTTGCTGCCTATTGTTT
GGCAAATTTTCAGATACTAGGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTATTCTGGAATCTAGTTAGTTAGGTTTAAAATAAACCTTGAATGTTAAGAAGTTGTA
GCCATCTGAGAGAAAAATCCAAAATGACTGAAAATGTAGACTCTGTCCAAGTGCATGTTA
CTACTTAAATTAGTCTTTCTGCTGGAATCCAAGGAGTATGTATGCCCCCTTGTGGTTAAC
TATTGCTCCTTTCATAATTTTTTACTTGAAATCATCCGCAATTGTTTCATAACTTTAACA
GTGTTTTGGAACTACACTTTTTTAATTTAAAAGTCTTTCCCCCTCCCCCATGCCATATAA
TTTGGGTGAGAACTATAAATTTGGGCATGTCTTTGCCTTGTAAATAGATTTCTGCTGGGG
AATCTTCTTGGCTGTTCTGGAAATGCTTTCCCAAAGCTGGGAAACTGTTCTAGCTTTAGA
TGGAAATTTTTATTCATCACAGACCCTAAATTTTATGTCCAAATTATAGTAAATCATTAA
ATATTGGTTTATGGTGCTTTTTTTTTTCTCTTAACTTGAAGGCATCTGAGGTCCCAAAGT
CTTCAAATTTCTTGGATTAAGAGAAAATAGAGTATAATAGCCTTTTAAGCATACGTACAT
AAAACACCAATGAAAATTAGGAGATCGACTCTGTTACTGTTTCAGTGTATTTTATTTGAA
ATACTCTATAAAATAGTTATAATGGAATTATAATGTTCAGTGGCACTTGAACCATTTTTT
TTAAAATTTTGCCAATAGTCAAAATAAGTAGGTACTTTTACTTATAAGTTTTTATTTTCT
GCTAAGCATTAACATTTCAGCATATAATAAACTAGGGTCTGATGACCTTTTCTGACTTGT
AGCAAATACTGCTATTTTTCAAAGTACCAAAATATACATCTAAGTTGCTGCCTATTGTTT
GGCAAATTTTCAGATACTAGGATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-438, gnl|bosTau2|chr15 (27763460-27763891)
               

               
               1-438, gnl|Hg17|chr11 (10492707-10492263)
               

               
               1-438, gnl|Mm7|chr7 (106731684-106731312)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-438, gnl|bosTau2|chr15 (27763460-27763891)
               

               
               1-438, gnl|Hg17|chr11 (10492707-10492263)
               

               
               1-438, gnl|Mm7|chr7 (106731684-106731312)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1-438, gnl\|bosTau2\|chr15 (27763460-27763891)
	1-438, gnl\|Hg17\|chr11 (10492707-10492263)
	1-438, gnl\|Mm7\|chr7 (106731684-106731312)