Non-Coding RNA Search

Ss1.1-rpigcb_11407.5

Sequence:


               
               CAGGACCATATGTGTAGGGGACATTGTTTGGGCCAAGATATATGGCTTCCCCTGGTGGCC
AGCCCGTATTCTTACTATAACTGTGAGCCGGAAAGATAACGGCCTTTTAGTCCGACAGGA
GGCCCGTATTTCATGGTTCGGGTCTCCAACAACATCTTTCCTGGCTCTTTCGCAACTCTC
CCCCTTTTTAGAAAACTTCCAGTCACGCTTTAATAAGAAGAGAAAGGGCCTGTATCGCAA
GGCTATCACAGAGGCAGCTAAGGCTGCCAAGCAGCTGACCCCTGAAGTGCGGGCTTTGTT
GACCCAGTTTGAAACGTGAACATGGACAGTAAAGGTAGGCAAGAACCTTTGGAAGGCACC
ACAGATTTTCTAGTCTACGAAATAGCTTGGCCAAACTGGAGAGAGATTGCACTCAGTTGG
CTGCTTTTTTATACTTAACCTTATAGCCATTTTTAGACCGAGAAGCTTAAACTGAACCAA
GGAATCAAATTTTGTCTTAAGGAAGTGATATTTTAGCAGTGTTTTTCAGTTTTGAAGTCT
AATATCATCCCAAGGCATAGGAGCCATAGCCTCAACTGAAAATGAATTTTTGCAGGGACT
GTTAATTGACATTTGTATCTAGTACTGTGTGTATGTGTGTATATATACATAGATACATAC
ACATAGAAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGACCATATGTGTAGGGGACATTGTTTGGGCCAAGATATATGGCTTCCCCTGGTGGCC
AGCCCGTATTCTTACTATAACTGTGAGCCGGAAAGATAACGGCCTTTTAGTCCGACAGGA
GGCCCGTATTTCATGGTTCGGGTCTCCAACAACATCTTTCCTGGCTCTTTCGCAACTCTC
CCCCTTTTTAGAAAACTTCCAGTCACGCTTTAATAAGAAGAGAAAGGGCCTGTATCGCAA
GGCTATCACAGAGGCAGCTAAGGCTGCCAAGCAGCTGACCCCTGAAGTGCGGGCTTTGTT
GACCCAGTTTGAAACGTGAACATGGACAGTAAAGGTAGGCAAGAACCTTTGGAAGGCACC
ACAGATTTTCTAGTCTACGAAATAGCTTGGCCAAACTGGAGAGAGATTGCACTCAGTTGG
CTGCTTTTTTATACTTAACCTTATAGCCATTTTTAGACCGAGAAGCTTAAACTGAACCAA
GGAATCAAATTTTGTCTTAAGGAAGTGATATTTTAGCAGTGTTTTTCAGTTTTGAAGTCT
AATATCATCCCAAGGCATAGGAGCCATAGCCTCAACTGAAAATGAATTTTTGCAGGGACT
GTTAATTGACATTTGTATCTAGTACTGTGTGTATGTGTGTATATATACATAGATACATAC
ACATAGAAAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26341596|dbj|BAC34460.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26341596|dbj|BAC34460.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-319, - strand, RNAz p=0.992703

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-319, - strand, RNAz p=0.992703

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-661, gnl|bosTau2|chr7 (48583407-48584084)
               

               
               1-661, gnl|Hg17|chr5 (159452285-159451578)
               

               
               1-661, gnl|Mm7|chr11 (43662637-43663294)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-661, gnl|bosTau2|chr7 (48583407-48584084)
               

               
               1-661, gnl|Hg17|chr5 (159452285-159451578)
               

               
               1-661, gnl|Mm7|chr11 (43662637-43663294)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbl (0.344392)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               cty (0.10408)

	1-661, gnl\|bosTau2\|chr7 (48583407-48584084)
	1-661, gnl\|Hg17\|chr5 (159452285-159451578)
	1-661, gnl\|Mm7\|chr11 (43662637-43663294)