Non-Coding RNA Search

Ss1.1-rpigcb_11445.5

Sequence:


               
               GCCCATTCCTTTCATTGCTGGCCTGTTTGATACTGGCAGTGGCCACCATCACTTTGTATT
TCATTCCACTCCGGTACATCATTTTAATCTGGGGCATAAATAAATTCACGAAGAAGCTTC
GAAATCCCTATGCCATCGACAATAATGAGCTACTCGACTTCCTCTCCAGGGTACCATCTG
ATGTTCAAAAGGTGCAGTACGCGGAACTGAAGCCCTGCAGCAGCCAGAGCCCCCTTCGGA
AGAAGCGCAGTGCGCTCTAGGACACACGCGACTTTGGCCGCCAGCACCCGATTCCATGTT
GGGTTGATTAGACCAGTGTCCCCTCTCGTTGCGTGGTATCTGTGCTGTCGTTCTAAAACA
TGTGCCGAGTGGAACCCTCTCTGTATTCCCCCCTTCTTCACATCACAGATGCACACACAT
GTGTGCACATCCATGTGCATGGGCGTCCTGGTTGCATCTCGAATCAACCCAGCAAAAAGA
AACCATCCGGAGACTGTGAAAGACTAGCATCCCTTCTCAAAAGACTAACATCTCTTCTCA
AATGGGAGATAAAGCAAGGAAGGCTTCCCTGGGTCTGAGCATCCTCCTTGAAAACAGCCA
GGAGGCCACTTGGATTCAAGCATGACTTTGAACTTGTTTTCACACCTCCCACGGATTCTC
ATTAAGATTCAGTTAGTTCCATGCCCCACCGGACCCCCACCCCCACTCCTTTCAGATGAC
TATTCACGAGTCAGTTTTTTTCTCTGAGTTCACAAGTCTTTGATAGCCACCATCTACCCA
AAGAATGTATATTATAAATAGATTTTTTTAAATAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCATTCCTTTCATTGCTGGCCTGTTTGATACTGGCAGTGGCCACCATCACTTTGTATT
TCATTCCACTCCGGTACATCATTTTAATCTGGGGCATAAATAAATTCACGAAGAAGCTTC
GAAATCCCTATGCCATCGACAATAATGAGCTACTCGACTTCCTCTCCAGGGTACCATCTG
ATGTTCAAAAGGTGCAGTACGCGGAACTGAAGCCCTGCAGCAGCCAGAGCCCCCTTCGGA
AGAAGCGCAGTGCGCTCTAGGACACACGCGACTTTGGCCGCCAGCACCCGATTCCATGTT
GGGTTGATTAGACCAGTGTCCCCTCTCGTTGCGTGGTATCTGTGCTGTCGTTCTAAAACA
TGTGCCGAGTGGAACCCTCTCTGTATTCCCCCCTTCTTCACATCACAGATGCACACACAT
GTGTGCACATCCATGTGCATGGGCGTCCTGGTTGCATCTCGAATCAACCCAGCAAAAAGA
AACCATCCGGAGACTGTGAAAGACTAGCATCCCTTCTCAAAAGACTAACATCTCTTCTCA
AATGGGAGATAAAGCAAGGAAGGCTTCCCTGGGTCTGAGCATCCTCCTTGAAAACAGCCA
GGAGGCCACTTGGATTCAAGCATGACTTTGAACTTGTTTTCACACCTCCCACGGATTCTC
ATTAAGATTCAGTTAGTTCCATGCCCCACCGGACCCCCACCCCCACTCCTTTCAGATGAC
TATTCACGAGTCAGTTTTTTTCTCTGAGTTCACAAGTCTTTGATAGCCACCATCTACCCA
AAGAATGTATATTATAAATAGATTTTTTTAAATAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50761366|ref|XP_424704.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50761366|ref|XP_424704.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               157-812, gnl|bosTau2|chr21 (7503662-7504283)
               

               
               157-812, gnl|Hg17|chr15 (92823162-92823789)
               

               
               157-812, gnl|Mm7|chr7 (67930743-67930010)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-812, gnl|bosTau2|chr21 (7503662-7504283)
               

               
               157-812, gnl|Hg17|chr15 (92823162-92823789)
               

               
               157-812, gnl|Mm7|chr7 (67930743-67930010)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	157-812, gnl\|bosTau2\|chr21 (7503662-7504283)
	157-812, gnl\|Hg17\|chr15 (92823162-92823789)
	157-812, gnl\|Mm7\|chr7 (67930743-67930010)