Non-Coding RNA Search

Ss1.1-rpigcb_11446.5

Sequence:


               
               TGAAAAAGGTGGACGAGATTAGAGAGATGGTTGATAATGATTTAGGTTTCCAGCAGGCTC
CACTGATGTGCTATTCCAGAACGAAAACACTTCTCTTTATTTCTAATGACAAAAAAGTAG
TTGGTTGCCTAATAGCAGAACATATCCAATGGGGCTACAGAGTTATAGAAGAAAAACTTC
CAGTTATCAGGTCAGAAGAAGAAAAAGTCAGATTTGAAAGGCAAAAAGCCTGGTGCTGCT
CAACATTGCCAGAGCCTGCCATCTGTGGGATCAGTCGCATATGGGTATTCAGCATGATGC
GTCGGAGGAAAATTGCTTCCCGCATGATTGAATGCCTAAGGAGTAACTTTATATATGGCT
CATATTTGAGTAAAGAAGAAATTGCTTTCTCAGATCCTACTCCAGATGGAAAACTGTTTG
CAACACAGTACTGTGGCACCGGTCAGTTTCTGGTATATAATTTTATTAATGGACAAAATA
GCACCTAAAGTAAATTCATGCCTACAGTATCAGAAGACATCTACTGAAGAGAATGGATTG
GTTGCTGTCTTTAACCAGGAACTAGGGCCATTTTTATTACAATGAACTCAGGACTGGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAAAGGTGGACGAGATTAGAGAGATGGTTGATAATGATTTAGGTTTCCAGCAGGCTC
CACTGATGTGCTATTCCAGAACGAAAACACTTCTCTTTATTTCTAATGACAAAAAAGTAG
TTGGTTGCCTAATAGCAGAACATATCCAATGGGGCTACAGAGTTATAGAAGAAAAACTTC
CAGTTATCAGGTCAGAAGAAGAAAAAGTCAGATTTGAAAGGCAAAAAGCCTGGTGCTGCT
CAACATTGCCAGAGCCTGCCATCTGTGGGATCAGTCGCATATGGGTATTCAGCATGATGC
GTCGGAGGAAAATTGCTTCCCGCATGATTGAATGCCTAAGGAGTAACTTTATATATGGCT
CATATTTGAGTAAAGAAGAAATTGCTTTCTCAGATCCTACTCCAGATGGAAAACTGTTTG
CAACACAGTACTGTGGCACCGGTCAGTTTCTGGTATATAATTTTATTAATGGACAAAATA
GCACCTAAAGTAAATTCATGCCTACAGTATCAGAAGACATCTACTGAAGAGAATGGATTG
GTTGCTGTCTTTAACCAGGAACTAGGGCCATTTTTATTACAATGAACTCAGGACTGGCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22477426|gb|AAH36943.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22477426|gb|AAH36943.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               339-457, + strand, RNAz p=0.807856

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-457, + strand, RNAz p=0.807856

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AL832041, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL832041, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-153, gnl|bosTau2|chr24 (25005443-25005589)
               

               
               7-153, gnl|Hg17|chr18 (17370146-17370000)
               

               
               7-153, gnl|Mm7|chr18 (10781570-10781424)
               


               
               339-600, gnl|bosTau2|chr24 (25010202-25010463)
               

               
               339-600, gnl|Hg17|chr18 (17364451-17364190)
               

               
               339-600, gnl|Mm7|chr18 (10774198-10773937)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-153, gnl|bosTau2|chr24 (25005443-25005589)
               

               
               7-153, gnl|Hg17|chr18 (17370146-17370000)
               

               
               7-153, gnl|Mm7|chr18 (10781570-10781424)
               


               
               339-600, gnl|bosTau2|chr24 (25010202-25010463)
               

               
               339-600, gnl|Hg17|chr18 (17364451-17364190)
               

               
               339-600, gnl|Mm7|chr18 (10774198-10773937)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               elu (0.385356)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	7-153, gnl\|bosTau2\|chr24 (25005443-25005589)
	7-153, gnl\|Hg17\|chr18 (17370146-17370000)
	7-153, gnl\|Mm7\|chr18 (10781570-10781424)

	339-600, gnl\|bosTau2\|chr24 (25010202-25010463)
	339-600, gnl\|Hg17\|chr18 (17364451-17364190)
	339-600, gnl\|Mm7\|chr18 (10774198-10773937)

	elu (0.385356)
	tbr (0.154178)
	lun (0.150489)
	pgl (0.118483)
	cty (0.10408)