Non-Coding RNA Search

Ss1.1-rpigcb_11522.5

Sequence:


               
               TCTAACTGCTCGGGCTGCACCGCTGCGCGCAACAGATGAGCCTGAACTTCCCCGGGTATG
TCCGCTTCCTAGACCCGACAACTCTTCCGCGGGGTAAAAACGCCCGAGTGCTTCGGCGTG
AGCTCTAAGCTTTAAAATCAGTTCTCCACTGCCACATGCTAACCATCTGCTGATTTGGAG
GCCGAAAACCGTCGCGTACCCGTCAGCTTTGCAAGCGAGGACCAGGTGAATGTAGTAATT
GGCGCTGACCCTTTACACATGAAAAGTAATCCTGAAATCATGGGAATTTTCTGAGGAAGA
GCACTCCTAAGAGGAAGAAAGATGTTCTCTCAGTAAGCATGATGGAAGCATTGAGACTTT
TAATATTAAAAGGCACATGACTGCATATCATACCTTCATAAAGCAGGACATATGAGTTAC
ATAAAAATTGTGATACGCCATATACCTGAGAGTAAGGCTTTCAACAGTCAAAAATCCTTA
TCCCTAAGGCCCTAGAAGGAGAATCCACATTCAGTCCTCCTTGAATCATGCAGATCCTGC
CCTGATTTCCAAGGCCCTTGAAGGTATTTATTTGAGCTGAAGGAAGATGATGATGCATGT
AAAAAAGCCCAGCAGACAGGAGCATTTTACCTCTTTCATAGCCTGGCTCCTTTGCTTCAG
AAATCAGAACATCAATACCTGGCCCCCAAGCATAGCCTATTAGAGTTGGAAAGGCTCCTG
GGTAAGCTTGGACAGGACACACAAAGAATAGAAGACTCTGTGCTGATTGGATGCTCTGAA
CAGCAAGAAGCATGGTTCGCCCTGGATCTAGGTCTAAACAGCTCCTCTTCCATAAATGCT
TCCTTACAGAAATCTGAAATGGAGAAAGAGCTCAAAGGGTCTTTTATTGAGCTGAGGAAG
GCTCTATTTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAACTGCTCGGGCTGCACCGCTGCGCGCAACAGATGAGCCTGAACTTCCCCGGGTATG
TCCGCTTCCTAGACCCGACAACTCTTCCGCGGGGTAAAAACGCCCGAGTGCTTCGGCGTG
AGCTCTAAGCTTTAAAATCAGTTCTCCACTGCCACATGCTAACCATCTGCTGATTTGGAG
GCCGAAAACCGTCGCGTACCCGTCAGCTTTGCAAGCGAGGACCAGGTGAATGTAGTAATT
GGCGCTGACCCTTTACACATGAAAAGTAATCCTGAAATCATGGGAATTTTCTGAGGAAGA
GCACTCCTAAGAGGAAGAAAGATGTTCTCTCAGTAAGCATGATGGAAGCATTGAGACTTT
TAATATTAAAAGGCACATGACTGCATATCATACCTTCATAAAGCAGGACATATGAGTTAC
ATAAAAATTGTGATACGCCATATACCTGAGAGTAAGGCTTTCAACAGTCAAAAATCCTTA
TCCCTAAGGCCCTAGAAGGAGAATCCACATTCAGTCCTCCTTGAATCATGCAGATCCTGC
CCTGATTTCCAAGGCCCTTGAAGGTATTTATTTGAGCTGAAGGAAGATGATGATGCATGT
AAAAAAGCCCAGCAGACAGGAGCATTTTACCTCTTTCATAGCCTGGCTCCTTTGCTTCAG
AAATCAGAACATCAATACCTGGCCCCCAAGCATAGCCTATTAGAGTTGGAAAGGCTCCTG
GGTAAGCTTGGACAGGACACACAAAGAATAGAAGACTCTGTGCTGATTGGATGCTCTGAA
CAGCAAGAAGCATGGTTCGCCCTGGATCTAGGTCTAAACAGCTCCTCTTCCATAAATGCT
TCCTTACAGAAATCTGAAATGGAGAAAGAGCTCAAAGGGTCTTTTATTGAGCTGAGGAAG
GCTCTATTTCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8BGA1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BGA1_MOUSE

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-220, gnl|bosTau2|chr28 (22391554-22391774)
               

               
               1-220, gnl|canFam2|chr4 (26887760-26889067)
               

               
               1-220, gnl|dasNov1|scaffold_46324 (3303-4570)
               

               
               1-220, gnl|echTel1|scaffold_313968 (170998-172244)
               

               
               1-220, gnl|hg17|chr10 (74525693-74526935)
               

               
               1-220, gnl|Hg17|chr10 (74525932-74526164)
               

               
               1-220, gnl|mm7|chr10 (58842543-58841274)
               

               
               1-220, gnl|Mm7|chr10 (58842233-58841982)
               

               
               1-220, gnl|monDom2|scaffold_14 (1143799-1145341)
               

               
               1-220, gnl|oryCun1|scaffold_201320 (6179-7423)
               

               
               1-220, gnl|panTro1|chr8_random (39985286-39986535)
               

               
               1-220, gnl|rheMac2|chr9 (63856147-63854892)
               

               
               1-220, gnl|rn3|chrUn (15123555-15124802)
               


               
               225-432, gnl|bosTau2|chr28 (22398660-22398876)
               

               
               225-432, gnl|Mm7|chr10 (58835106-58834901)
               


               
               562-703, gnl|bosTau2|chr28 (22423614-22423755)
               

               
               562-703, gnl|Hg17|chr10 (74549780-74549921)
               

               
               562-703, gnl|Mm7|chr14 (17960508-17960649)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-220, gnl|bosTau2|chr28 (22391554-22391774)
               

               
               1-220, gnl|canFam2|chr4 (26887760-26889067)
               

               
               1-220, gnl|dasNov1|scaffold_46324 (3303-4570)
               

               
               1-220, gnl|echTel1|scaffold_313968 (170998-172244)
               

               
               1-220, gnl|hg17|chr10 (74525693-74526935)
               

               
               1-220, gnl|Hg17|chr10 (74525932-74526164)
               

               
               1-220, gnl|mm7|chr10 (58842543-58841274)
               

               
               1-220, gnl|Mm7|chr10 (58842233-58841982)
               

               
               1-220, gnl|monDom2|scaffold_14 (1143799-1145341)
               

               
               1-220, gnl|oryCun1|scaffold_201320 (6179-7423)
               

               
               1-220, gnl|panTro1|chr8_random (39985286-39986535)
               

               
               1-220, gnl|rheMac2|chr9 (63856147-63854892)
               

               
               1-220, gnl|rn3|chrUn (15123555-15124802)
               


               
               225-432, gnl|bosTau2|chr28 (22398660-22398876)
               

               
               225-432, gnl|Mm7|chr10 (58835106-58834901)
               


               
               562-703, gnl|bosTau2|chr28 (22423614-22423755)
               

               
               562-703, gnl|Hg17|chr10 (74549780-74549921)
               

               
               562-703, gnl|Mm7|chr14 (17960508-17960649)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               nca (0.136874)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               nca (0.136874)
               

               
               cty (0.10408)

	1-220, gnl\|bosTau2\|chr28 (22391554-22391774)
	1-220, gnl\|canFam2\|chr4 (26887760-26889067)
	1-220, gnl\|dasNov1\|scaffold_46324 (3303-4570)
	1-220, gnl\|echTel1\|scaffold_313968 (170998-172244)
	1-220, gnl\|hg17\|chr10 (74525693-74526935)
	1-220, gnl\|Hg17\|chr10 (74525932-74526164)
	1-220, gnl\|mm7\|chr10 (58842543-58841274)
	1-220, gnl\|Mm7\|chr10 (58842233-58841982)
	1-220, gnl\|monDom2\|scaffold_14 (1143799-1145341)
	1-220, gnl\|oryCun1\|scaffold_201320 (6179-7423)
	1-220, gnl\|panTro1\|chr8_random (39985286-39986535)
	1-220, gnl\|rheMac2\|chr9 (63856147-63854892)
	1-220, gnl\|rn3\|chrUn (15123555-15124802)

	225-432, gnl\|bosTau2\|chr28 (22398660-22398876)
	225-432, gnl\|Mm7\|chr10 (58835106-58834901)

	562-703, gnl\|bosTau2\|chr28 (22423614-22423755)
	562-703, gnl\|Hg17\|chr10 (74549780-74549921)
	562-703, gnl\|Mm7\|chr14 (17960508-17960649)

	mgp (0.230681)
	cbl (0.229595)
	tes (0.207814)
	nca (0.136874)
	cty (0.10408)