Non-Coding RNA Search

Ss1.1-rpigcb_11533.5

Sequence:


               
               GCTTGTTGAAACCCAAAAACTAGTAAGTTTTTCCTGCTTATACAGTTTACTGCTGGTTAA
AATAAGGAGTAAGCGGCTTAAAGTAATTCTTTTTTCTGGATCAAAGGCTGGCTGTGCATA
ATTGAATGGTAACGTACATATATATTGCTTGAATAAAACTTTTAAGGGTGATAGGGAACT
CATAATGTAACTAGACCTTCAAGTGAAACTTATTTGCATGTTTGAGATGCCAAACTAAAA
TTTTAATAATTCTAACAGATTTAGCTTTCCTTTCTAGCAAAAATTTGTTGAATCCTATCA
CCTTTAAATGGTTTTACTAACAGTTTTCAAAAATTAAAATTTTGGGGGTGAAGTGGGCCA
AGCTAAGGTAATTTTGATAAGCCTAAACACACTCTTAAATGTGACGATCACAAATGGCAG
TTCTAATGTAGCACTTAATGGCATCAATATTTACACCTAGCGCGTTTTCACAGAATTACA
CTATCCACCTGGTACCTAAGTCTTGTCATGGACTTACAGGTTTGCATGGGTTCCAAATAC
TGATTTATGGTACTGTTTTTGGAACTATTGTGGGACTACATTTTGGTGTGGTGTTTGGGT
AGTGAAGTTAGTTTGACATGAAAGTTTTGCATTGGACAGATCTGCTGTGAAGCATTCTTT
GTTAAAGTGAATCCATGGTTGGATACCTGCTTTTCACTTGAGCTTTTGGTTCCTTAATCC
TTCTGTGCCTTTTTTCTTTTCTTTAAAAAAAAATTTTTTTTATTATTTTTGGACGATGGG
TGCCAGTTCTTCGGCACATTCACTGGGCCCAACAGTGAGATTGAAAAGTTGGGAAATGCC
TCACGCCATAAATGCTAATTGACAGTTAGTCTAATTTTCCTGTTTCTGCTTTTAGATCTC
CAAGACGGAGAAGCTTCTCCCGTAGCCGGAGCAGGTAAATAAATAACTACTTTTTGCGGG
CCACGTTCTCAGAAATGGGAGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTGTTGAAACCCAAAAACTAGTAAGTTTTTCCTGCTTATACAGTTTACTGCTGGTTAA
AATAAGGAGTAAGCGGCTTAAAGTAATTCTTTTTTCTGGATCAAAGGCTGGCTGTGCATA
ATTGAATGGTAACGTACATATATATTGCTTGAATAAAACTTTTAAGGGTGATAGGGAACT
CATAATGTAACTAGACCTTCAAGTGAAACTTATTTGCATGTTTGAGATGCCAAACTAAAA
TTTTAATAATTCTAACAGATTTAGCTTTCCTTTCTAGCAAAAATTTGTTGAATCCTATCA
CCTTTAAATGGTTTTACTAACAGTTTTCAAAAATTAAAATTTTGGGGGTGAAGTGGGCCA
AGCTAAGGTAATTTTGATAAGCCTAAACACACTCTTAAATGTGACGATCACAAATGGCAG
TTCTAATGTAGCACTTAATGGCATCAATATTTACACCTAGCGCGTTTTCACAGAATTACA
CTATCCACCTGGTACCTAAGTCTTGTCATGGACTTACAGGTTTGCATGGGTTCCAAATAC
TGATTTATGGTACTGTTTTTGGAACTATTGTGGGACTACATTTTGGTGTGGTGTTTGGGT
AGTGAAGTTAGTTTGACATGAAAGTTTTGCATTGGACAGATCTGCTGTGAAGCATTCTTT
GTTAAAGTGAATCCATGGTTGGATACCTGCTTTTCACTTGAGCTTTTGGTTCCTTAATCC
TTCTGTGCCTTTTTTCTTTTCTTTAAAAAAAAATTTTTTTTATTATTTTTGGACGATGGG
TGCCAGTTCTTCGGCACATTCACTGGGCCCAACAGTGAGATTGAAAAGTTGGGAAATGCC
TCACGCCATAAATGCTAATTGACAGTTAGTCTAATTTTCCTGTTTCTGCTTTTAGATCTC
CAAGACGGAGAAGCTTCTCCCGTAGCCGGAGCAGGTAAATAAATAACTACTTTTTGCGGG
CCACGTTCTCAGAAATGGGAGTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               471-860, + strand, RNAz p=0.942465

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               471-860, + strand, RNAz p=0.942465

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               600-699, + strand, RNAmicro p=0.988996

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               600-699, + strand, RNAmicro p=0.988996

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-982, gnl|bosTau2|chr23 (9769865-9770841)
               

               
               1-982, gnl|Hg17|chr6 (36676011-36676988)
               

               
               1-982, gnl|Mm7|chr17 (27228207-27229166)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-982, gnl|bosTau2|chr23 (9769865-9770841)
               

               
               1-982, gnl|Hg17|chr6 (36676011-36676988)
               

               
               1-982, gnl|Mm7|chr17 (27228207-27229166)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               cty (0.10408)

	1-982, gnl\|bosTau2\|chr23 (9769865-9770841)
	1-982, gnl\|Hg17\|chr6 (36676011-36676988)
	1-982, gnl\|Mm7\|chr17 (27228207-27229166)