Ss1.1-rpigcb_11544.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACACTGGAGTGGTTGCAGGCCAAGCTCAGGCCCAGGCTGGGCTGAGGTGGAAAGATGGCT AGTGGAGGCCGTGAGCTCAGGACAAGGATGTCAGTAGAAACAAGGAACACAGACGATGAG CTGATCTATGAGATTGTATTCAACCACTTCAAAAGACATAAGGTGGAGATTTCAAATGCA ATAAAAAAGCCGTTTCCCTTCCTGGAGGGCCTTCGTGACCGTGAACTCATCACCAATAAA ATGTATGAAGACTTTCAAGATTCCTGTAGAAACCTGGTCCCTGTGCCAAGAGTGGTGTAC AAAGTTCTCAGTGAGCTGGAGAAGATATTTGACCTGCCGCTTCTGGAAGCATTGTTCAGT GAGGTCAACATGCAGGAGTATCCTGATTTAAATCAAATTTATAAAAGCTTTGAAAATGTG ATCCAAGAGAAACTTAATCATGAAGAAGGTGACAGAGAAGAGAGGGAGGAGAGGCCTAAT GTCCAACTGAGGCTTCAGCAAGGATCCAATAAAAACTCATTTCGAAGCCTGACTTGGTTG AGCAGAAGATTCTCCTCTTATGATGGTACAAGCCCACGTGAAAATGGACTCTCGGAGCAC CTCTGTGAAATGGAACAGACAAATGCAGAGAGGACAGATACAATCAGTGATGAAAATGAT GCACTAGAAAGGCAACAAGCAAATGAACACGATGCCCAAGAGTCTGAACCAGCAGAGTAC TACGAACAAGTACATGATGAATCAGATAATGGAGATGCAAGAAAGGAGATGCCCAACCCA GAGCCTACTGATGAAAAAAGTGCCAAACTATCCAACCATGGATACCAAATCAATTCCTGT TCTGTCTATCTGGTGGATATAAAGAAGGAAAAGCCTTTTTTGACCTCAGAATTTGAATTT CAATCCCAGGCATCTGACGTAATAGTGATCAGCAGTGAGGACTCTGCAGAGTCCGGGGAT GGAGAAATGTCCTCAGGAGCTTCCAGGTCAGCACAGAGAACATTGCCCGATCTTCCAAAT ACTGAAAACAAAGCTTTTTATGGACCAAGCAACAGGAAAAGACGGATGGCCTCTAGTGAC TCTTCAGAATTGAGTGATGAAGGTGCATCTCGGAAACCATACACTTCATTCCTAGAAAAT GGGTCAGATACCTCGGATTCGGAAAGCAATTCTACTTTGGGAAAACACAGTGGGAAAAGA AGTAAGAATGCATAAGAATTTACTTATTGTCTATAATTTAATAGGACAAAAAATAATACC TTTTAAAATAACCATTTTTTTTTCAAAATGCAGATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACACTGGAGTGGTTGCAGGCCAAGCTCAGGCCCAGGCTGGGCTGAGGTGGAAAGATGGCT AGTGGAGGCCGTGAGCTCAGGACAAGGATGTCAGTAGAAACAAGGAACACAGACGATGAG CTGATCTATGAGATTGTATTCAACCACTTCAAAAGACATAAGGTGGAGATTTCAAATGCA ATAAAAAAGCCGTTTCCCTTCCTGGAGGGCCTTCGTGACCGTGAACTCATCACCAATAAA ATGTATGAAGACTTTCAAGATTCCTGTAGAAACCTGGTCCCTGTGCCAAGAGTGGTGTAC AAAGTTCTCAGTGAGCTGGAGAAGATATTTGACCTGCCGCTTCTGGAAGCATTGTTCAGT GAGGTCAACATGCAGGAGTATCCTGATTTAAATCAAATTTATAAAAGCTTTGAAAATGTG ATCCAAGAGAAACTTAATCATGAAGAAGGTGACAGAGAAGAGAGGGAGGAGAGGCCTAAT GTCCAACTGAGGCTTCAGCAAGGATCCAATAAAAACTCATTTCGAAGCCTGACTTGGTTG AGCAGAAGATTCTCCTCTTATGATGGTACAAGCCCACGTGAAAATGGACTCTCGGAGCAC CTCTGTGAAATGGAACAGACAAATGCAGAGAGGACAGATACAATCAGTGATGAAAATGAT GCACTAGAAAGGCAACAAGCAAATGAACACGATGCCCAAGAGTCTGAACCAGCAGAGTAC TACGAACAAGTACATGATGAATCAGATAATGGAGATGCAAGAAAGGAGATGCCCAACCCA GAGCCTACTGATGAAAAAAGTGCCAAACTATCCAACCATGGATACCAAATCAATTCCTGT TCTGTCTATCTGGTGGATATAAAGAAGGAAAAGCCTTTTTTGACCTCAGAATTTGAATTT CAATCCCAGGCATCTGACGTAATAGTGATCAGCAGTGAGGACTCTGCAGAGTCCGGGGAT GGAGAAATGTCCTCAGGAGCTTCCAGGTCAGCACAGAGAACATTGCCCGATCTTCCAAAT ACTGAAAACAAAGCTTTTTATGGACCAAGCAACAGGAAAAGACGGATGGCCTCTAGTGAC TCTTCAGAATTGAGTGATGAAGGTGCATCTCGGAAACCATACACTTCATTCCTAGAAAAT GGGTCAGATACCTCGGATTCGGAAAGCAATTCTACTTTGGGAAAACACAGTGGGAAAAGA AGTAAGAATGCATAAGAATTTACTTATTGTCTATAATTTAATAGGACAAAAAATAATACC TTTTAAAATAACCATTTTTTTTTCAAAATGCAGATA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 250-418, gnl|bosTau2|chr2 (70645901-70645733) | |
| 250-418, gnl|canFam2|chr25 (45571991-45572608) | |
| 250-418, gnl|dasNov1|scaffold_135533 (3404-2823) | |
| 250-418, gnl|echTel1|scaffold_158067 (754-181) | |
| 250-418, gnl|hg17|chr2 (231134310-231134922) | |
| 250-418, gnl|Hg17|chr2 (231134398-231134566) | |
| 250-418, gnl|loxAfr1|scaffold_4216 (92794-92145) | |
| 250-418, gnl|mm7|chr1 (85563473-85564074) | |
| 250-418, gnl|Mm7|chr1 (85563563-85563731) | |
| 250-418, gnl|oryCun1|scaffold_176355 (6037-6637) | |
| 250-418, gnl|panTro1|chr13 (121784163-121784776) | |
| 250-418, gnl|rheMac2|chr12 (94311953-94312566) | |
| 250-418, gnl|rn3|chr9 (84567675-84568272) | |
| 565-715, gnl|bosTau2|chr2 (70695685-70695535) | |
| 565-715, gnl|Mm7|chr1 (85570168-85570327) | |
| 802-912, gnl|bosTau2|chr2 (70633262-70633152) | |
| 802-912, gnl|canFam2|chr25 (45582275-45582593) | |
| 802-912, gnl|dasNov1|scaffold_4425 (49604-49298) | |
| 802-912, gnl|echTel1|scaffold_285360 (39462-39160) | |
| 802-912, gnl|hg17|chr2 (231151468-231151797) | |
| 802-912, gnl|Hg17|chr2 (231151490-231151600) | |
| 802-912, gnl|loxAfr1|scaffold_4216 (33540-33835) | |
| 802-912, gnl|mm7|chr1 (85574325-85574631) | |
| 802-912, gnl|Mm7|chr1 (85574346-85574456) | |
| 802-912, gnl|oryCun1|scaffold_91366 (1340-1100) | |
| 802-912, gnl|panTro1|chr13 (121797230-121797559) | |
| 802-912, gnl|rheMac2|chr12 (94329457-94329764) | |
| 802-912, gnl|rn3|chr9 (84580800-84581099) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 250-418, gnl|bosTau2|chr2 (70645901-70645733) | |
| 250-418, gnl|canFam2|chr25 (45571991-45572608) | |
| 250-418, gnl|dasNov1|scaffold_135533 (3404-2823) | |
| 250-418, gnl|echTel1|scaffold_158067 (754-181) | |
| 250-418, gnl|hg17|chr2 (231134310-231134922) | |
| 250-418, gnl|Hg17|chr2 (231134398-231134566) | |
| 250-418, gnl|loxAfr1|scaffold_4216 (92794-92145) | |
| 250-418, gnl|mm7|chr1 (85563473-85564074) | |
| 250-418, gnl|Mm7|chr1 (85563563-85563731) | |
| 250-418, gnl|oryCun1|scaffold_176355 (6037-6637) | |
| 250-418, gnl|panTro1|chr13 (121784163-121784776) | |
| 250-418, gnl|rheMac2|chr12 (94311953-94312566) | |
| 250-418, gnl|rn3|chr9 (84567675-84568272) | |
| 565-715, gnl|bosTau2|chr2 (70695685-70695535) | |
| 565-715, gnl|Mm7|chr1 (85570168-85570327) | |
| 802-912, gnl|bosTau2|chr2 (70633262-70633152) | |
| 802-912, gnl|canFam2|chr25 (45582275-45582593) | |
| 802-912, gnl|dasNov1|scaffold_4425 (49604-49298) | |
| 802-912, gnl|echTel1|scaffold_285360 (39462-39160) | |
| 802-912, gnl|hg17|chr2 (231151468-231151797) | |
| 802-912, gnl|Hg17|chr2 (231151490-231151600) | |
| 802-912, gnl|loxAfr1|scaffold_4216 (33540-33835) | |
| 802-912, gnl|mm7|chr1 (85574325-85574631) | |
| 802-912, gnl|Mm7|chr1 (85574346-85574456) | |
| 802-912, gnl|oryCun1|scaffold_91366 (1340-1100) | |
| 802-912, gnl|panTro1|chr13 (121797230-121797559) | |
| 802-912, gnl|rheMac2|chr12 (94329457-94329764) | |
| 802-912, gnl|rn3|chr9 (84580800-84581099) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| cbl (0.573987) | |
| sto (0.359648) | |
| cty (0.20816) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| fty (0.17584) | |
| cje (0.165235) | |
| lin (0.145603) | |
| cst (0.140036) | |
| kid (0.129735) | |
| thg (0.126791) | |
| ebs (0.118301) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.573987) | |
| sto (0.359648) | |
| cty (0.20816) | |
| tes (0.207814) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| fty (0.17584) | |
| cje (0.165235) | |
| lin (0.145603) | |
| cst (0.140036) | |
| kid (0.129735) | |
| thg (0.126791) | |
| ebs (0.118301) |