Non-Coding RNA Search

Ss1.1-rpigcb_11715.5

Sequence:


               
               GTGGAAGGCCGAGCGGTGCATGGCTGATGAGAACTGCTTCAAGGTGATGTTCCTCCAGCG
CAAAGGGCAGGTGATCATGACCATCGAGCTCCTGGACACAGAAGAGGCCCAGACAGAGGA
CCCCGTAGAGGTTCAGCACCTGGCTCGGTACGTGGAGCAGTACGTGGGGACCGAGGGTGC
GTCCAGCTCGCCCACTGAGGGCTTCCTCCTGAAACCTGTGTTCCTGCAGAGGAACCTCAA
GAAGTTCCGCAGGTGGCAGTGTGAGCAGGTGCGCGCCCTGCGTGGCGAGGCCAAGAGCTC
CTGGAAGCGTTTGGTCGGGGTGGAGAGCGCCTGCAACGTGGACTGCCGCTTCAAGCTCAG
CACGCACAAGATGATGTTCATTGTGAACTCCGAGGACTACATGTACCGCCGTGGGACCCT
CTGCCGGGCCAAGCAGGTGCAGCCCCTGGTCCTGCTTCGCCACCACCAGCACTTTGAGGA
GTGGCATAGCCGCTGGCTGGAGGACAATGTGACAGTGGAGGCAGCCAGCCTGGTGCAGGA
CTGGCTGATGGGTGAGGAGGACGAGGACATGGTGCCCTGCAAGACACTCTGCGAGACGGC
GCACGTGCACGGGCTGCCGGTGACCCGCTACCGAGTGCAGTACAGCCGCCGCCCAGCCTC
ACCCTGACGCACCCATGGGCACCACAACACGCAGCTTGGCAAGGTCGCTTCCTCAGCCTC
TGTGTCGGTTGGGTGTTTTCATGAACAGCGTGAGGGGAGCAGGGTGTCCCCCCAGCCTTG
CTGCTACGGGCTGTGAGCTCCAGAGATGGGAGGGTCGTGTGGGCTTTCTGCCCCACGCTG
CCATCCCTCTCGGCTTCCTCGCTTCCTTTGGGCCCTTCCTGTGCCAAACCTGAACCCCCT
GCCCTTGAACTCTAAGGGCTTAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGAAGGCCGAGCGGTGCATGGCTGATGAGAACTGCTTCAAGGTGATGTTCCTCCAGCG
CAAAGGGCAGGTGATCATGACCATCGAGCTCCTGGACACAGAAGAGGCCCAGACAGAGGA
CCCCGTAGAGGTTCAGCACCTGGCTCGGTACGTGGAGCAGTACGTGGGGACCGAGGGTGC
GTCCAGCTCGCCCACTGAGGGCTTCCTCCTGAAACCTGTGTTCCTGCAGAGGAACCTCAA
GAAGTTCCGCAGGTGGCAGTGTGAGCAGGTGCGCGCCCTGCGTGGCGAGGCCAAGAGCTC
CTGGAAGCGTTTGGTCGGGGTGGAGAGCGCCTGCAACGTGGACTGCCGCTTCAAGCTCAG
CACGCACAAGATGATGTTCATTGTGAACTCCGAGGACTACATGTACCGCCGTGGGACCCT
CTGCCGGGCCAAGCAGGTGCAGCCCCTGGTCCTGCTTCGCCACCACCAGCACTTTGAGGA
GTGGCATAGCCGCTGGCTGGAGGACAATGTGACAGTGGAGGCAGCCAGCCTGGTGCAGGA
CTGGCTGATGGGTGAGGAGGACGAGGACATGGTGCCCTGCAAGACACTCTGCGAGACGGC
GCACGTGCACGGGCTGCCGGTGACCCGCTACCGAGTGCAGTACAGCCGCCGCCCAGCCTC
ACCCTGACGCACCCATGGGCACCACAACACGCAGCTTGGCAAGGTCGCTTCCTCAGCCTC
TGTGTCGGTTGGGTGTTTTCATGAACAGCGTGAGGGGAGCAGGGTGTCCCCCCAGCCTTG
CTGCTACGGGCTGTGAGCTCCAGAGATGGGAGGGTCGTGTGGGCTTTCTGCCCCACGCTG
CCATCCCTCTCGGCTTCCTCGCTTCCTTTGGGCCCTTCCTGTGCCAAACCTGAACCCCCT
GCCCTTGAACTCTAAGGGCTTAGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55648593|ref|XP_512485.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55648593|ref|XP_512485.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               427-666, - strand, RNAz p=0.947469
               

               
               745-921, - strand, RNAz p=0.824213

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-666, - strand, RNAz p=0.947469
               

               
               745-921, - strand, RNAz p=0.824213

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

Help | Less info


               
               108-921, gnl|bosTau2|chr7 (6128986-6129799)

Aligned organism(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-921, gnl|bosTau2|chr7 (6128986-6129799)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	427-666, - strand, RNAz p=0.947469
	745-921, - strand, RNAz p=0.824213