Non-Coding RNA Search

Ss1.1-rpigcb_11717.5

Sequence:


               
               GGCTGTCATAACAAAATTCCACAGGTACGGCCCTAAAAAGCAGAAAAAAAAAATAATAAT
AATAATTTAGTCTCTCACAAAAGAGTCAAGTGGGGAGATAAAAACATACACATTATTCCA
TACACATTATTCCATGCATGATAATACAAAGGGTAGGGTGTTGTGGAAATGCCAATTATC
ATGTTGACTTCACTTGTCAGCACTGTACTCCCTGAGAATTTGCTGTGTCAATCCCAGTTA
TCTGTGTGAGATAAAAATTGGACTAGGTTTCTTTGTACACTTTTTGGAATTCAGAATCTC
TCTCTTTTTTTTTTTTTTTTGGCCATGCCTACACATATGAAAGTTCCTGGGCCAGGGATT
GAACCTAGGCCACAGTAGCAATCCAAGCCGCTCTAGTGACAACACCAAATTCTTAACAGG
ATGCTAACAGGAGAACCCCAGAATATCTTTTTATGACTACTACGAATTGTAAAATTTAGA
CTCTAATTTTTCCTTTTGTTCATTTTTTTTCAGTGTTTGAAAGATGTATGGTGATCCTGA
AGCCATCAGACATAAGACAACTTCTAGCAACTTCAGGGGAAGTTTGTTGACACTCAGGCT
GCAGTATTTTTAGCAAACGTGATTGGACAGTGGGCCTGTGGCCTATCTTTTGGTGGAGTG
AAAAATTTGAGCCAGTGAAGCCAAATCCTTAGAGCAAGCAGCATGTTTGTCTGCTTGCTA
ATTGCAAATAGGCATTTACAATGTGAATTTGAAATCAGATGTCTCCATTACTTCCAGCCA
GTGTGGCATCATAGGTGTTTCCTAAGTTTTAAGTCCTAGGGCGGGAAAAAAATACTCCAC
TAGCGTCTACTGTCTCCACCAGAGACTGCCATGGAAGCTTCATTTTTTTGTGTCGCCATT
CTTTTTCTCTCCATCTCCCTATCTTCTGCACAATCATGCCTTCTTCCTAACTCAAGAATA
AGGTCTTGGAATAGTTATATTACCAACTTACCCAAAGAAATAAAAGCAATATTTTCCCAG
TCTCTTGACCATCATGATGTCTTACAGTTAAAAGCCAACAAAAACTATTTCAGACTCCTC
GGAATAAATTAGAAGAAATGGCACACTCACCACAAAACATGCATAACTGAAATGGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGTCATAACAAAATTCCACAGGTACGGCCCTAAAAAGCAGAAAAAAAAAATAATAAT
AATAATTTAGTCTCTCACAAAAGAGTCAAGTGGGGAGATAAAAACATACACATTATTCCA
TACACATTATTCCATGCATGATAATACAAAGGGTAGGGTGTTGTGGAAATGCCAATTATC
ATGTTGACTTCACTTGTCAGCACTGTACTCCCTGAGAATTTGCTGTGTCAATCCCAGTTA
TCTGTGTGAGATAAAAATTGGACTAGGTTTCTTTGTACACTTTTTGGAATTCAGAATCTC
TCTCTTTTTTTTTTTTTTTTGGCCATGCCTACACATATGAAAGTTCCTGGGCCAGGGATT
GAACCTAGGCCACAGTAGCAATCCAAGCCGCTCTAGTGACAACACCAAATTCTTAACAGG
ATGCTAACAGGAGAACCCCAGAATATCTTTTTATGACTACTACGAATTGTAAAATTTAGA
CTCTAATTTTTCCTTTTGTTCATTTTTTTTCAGTGTTTGAAAGATGTATGGTGATCCTGA
AGCCATCAGACATAAGACAACTTCTAGCAACTTCAGGGGAAGTTTGTTGACACTCAGGCT
GCAGTATTTTTAGCAAACGTGATTGGACAGTGGGCCTGTGGCCTATCTTTTGGTGGAGTG
AAAAATTTGAGCCAGTGAAGCCAAATCCTTAGAGCAAGCAGCATGTTTGTCTGCTTGCTA
ATTGCAAATAGGCATTTACAATGTGAATTTGAAATCAGATGTCTCCATTACTTCCAGCCA
GTGTGGCATCATAGGTGTTTCCTAAGTTTTAAGTCCTAGGGCGGGAAAAAAATACTCCAC
TAGCGTCTACTGTCTCCACCAGAGACTGCCATGGAAGCTTCATTTTTTTGTGTCGCCATT
CTTTTTCTCTCCATCTCCCTATCTTCTGCACAATCATGCCTTCTTCCTAACTCAAGAATA
AGGTCTTGGAATAGTTATATTACCAACTTACCCAAAGAAATAAAAGCAATATTTTCCCAG
TCTCTTGACCATCATGATGTCTTACAGTTAAAAGCCAACAAAAACTATTTCAGACTCCTC
GGAATAAATTAGAAGAAATGGCACACTCACCACAAAACATGCATAACTGAAATGGTTTTT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               122-299, gnl|bosTau2|chr14 (42666428-42666608)
               

               
               122-299, gnl|Hg17|chr8 (95787050-95787252)
               


               
               439-1132, gnl|bosTau2|chr14 (42666601-42667267)
               

               
               439-1132, gnl|Hg17|chr8 (95787245-95787954)
               

               
               439-1132, gnl|Mm7|chr4 (11260676-11259926)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-299, gnl|bosTau2|chr14 (42666428-42666608)
               

               
               122-299, gnl|Hg17|chr8 (95787050-95787252)
               


               
               439-1132, gnl|bosTau2|chr14 (42666601-42667267)
               

               
               439-1132, gnl|Hg17|chr8 (95787245-95787954)
               

               
               439-1132, gnl|Mm7|chr4 (11260676-11259926)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               rec (0.17307)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

	122-299, gnl\|bosTau2\|chr14 (42666428-42666608)
	122-299, gnl\|Hg17\|chr8 (95787050-95787252)

	439-1132, gnl\|bosTau2\|chr14 (42666601-42667267)
	439-1132, gnl\|Hg17\|chr8 (95787245-95787954)
	439-1132, gnl\|Mm7\|chr4 (11260676-11259926)

	rec (0.17307)
	liv (0.146284)
	pty (0.142714)
	bla (0.124347)
	cty (0.10408)