Non-Coding RNA Search

Ss1.1-rpigcb_11767.5

Sequence:


               
               CCTATCTCTCTTGAACTTGAGAATCATACGCATTACTTTACAGCCTGAAAAGGCCATTTT
GGGGTCCGTTTTTCTCTCTTCCTGCCAATCCCAGCTGAAATTAGTCGAAAGAAAATTTGA
TGAGGCTCTCAGCTTTGAACAAAATCCCCTTATGATACACTAGCACCATCTTTATCCAGC
TTTACGCAGTCAGGCTAACTCCAGAAACTTGTGGTTTGCAGTATAAAATCGGTCTACCTT
TAGCCAGGCACAGGCAGCCCTCCATAGGAAGGAAAATAATAACACGTTTAGTTAAGTACA
CCAATGCAATATGTGCGTTTTCGAAATGTAACTTTAAAGTAACTTCAGAAGTAATCTTTG
CAAATAAGGCTTCAATTAGAATTATTTTTCTTAAAAAATCGACCACTCTCTCTTAAATGC
CCAAGTCTAAAGAAAAGTCCACAGCACCCCAGAATTACAAAATCACCCCTGAGAGGACAT
CTGCAAAATATCACCAAGAAGAAAGATCTCAGACTAATGTTGCAAGTTTCATTTCTCAAA
CTTTGTAATAGAAGGCGAGTCATCTCTCAGAGCTGCCATCTTGACTTTTTGGATTTCTTT
GGGGGATTATTTAATGAAAAACATGCCATGATTTGCTTTAAGCTAAAGTCCTATTCTAGA
CAGTCTGCTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTATCTCTCTTGAACTTGAGAATCATACGCATTACTTTACAGCCTGAAAAGGCCATTTT
GGGGTCCGTTTTTCTCTCTTCCTGCCAATCCCAGCTGAAATTAGTCGAAAGAAAATTTGA
TGAGGCTCTCAGCTTTGAACAAAATCCCCTTATGATACACTAGCACCATCTTTATCCAGC
TTTACGCAGTCAGGCTAACTCCAGAAACTTGTGGTTTGCAGTATAAAATCGGTCTACCTT
TAGCCAGGCACAGGCAGCCCTCCATAGGAAGGAAAATAATAACACGTTTAGTTAAGTACA
CCAATGCAATATGTGCGTTTTCGAAATGTAACTTTAAAGTAACTTCAGAAGTAATCTTTG
CAAATAAGGCTTCAATTAGAATTATTTTTCTTAAAAAATCGACCACTCTCTCTTAAATGC
CCAAGTCTAAAGAAAAGTCCACAGCACCCCAGAATTACAAAATCACCCCTGAGAGGACAT
CTGCAAAATATCACCAAGAAGAAAGATCTCAGACTAATGTTGCAAGTTTCATTTCTCAAA
CTTTGTAATAGAAGGCGAGTCATCTCTCAGAGCTGCCATCTTGACTTTTTGGATTTCTTT
GGGGGATTATTTAATGAAAAACATGCCATGATTTGCTTTAAGCTAAAGTCCTATTCTAGA
CAGTCTGCTTTG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-671, gnl|bosTau2|chr1 (96817493-96816813)
               

               
               3-671, gnl|Hg17|chr21 (37047189-37046500)
               

               
               3-671, gnl|Mm7|chr16 (94420736-94419999)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-671, gnl|bosTau2|chr1 (96817493-96816813)
               

               
               3-671, gnl|Hg17|chr21 (37047189-37046500)
               

               
               3-671, gnl|Mm7|chr16 (94420736-94419999)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cty (0.20816)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               jca (0.11396)

	3-671, gnl\|bosTau2\|chr1 (96817493-96816813)
	3-671, gnl\|Hg17\|chr21 (37047189-37046500)
	3-671, gnl\|Mm7\|chr16 (94420736-94419999)