Non-Coding RNA Search

Ss1.1-rpigcb_11781.5

Sequence:


               
               ATTAAAAATAATACCTACCTATAAATAAAAATTTGATCTAAAAAAATAGTTCCTCTGTCA
AATTTGACCTAAGTTCCCAAACTCTGTGTAACCATTACTAGTGATTCCTTCTTTTATTAT
TTCGGAATTAATTATTTTGTAGAATTGATTTTACAATTTCAAGTTGATTTGGGGCCATGA
AGTATACAGCCTGCTTTGAAAGAGTCTTATACACCCTTTAACATACAACAATATTTATTG
CTCATCATGTCCCAAATACTTTAGTAAAGCATATTGTTTCTTGGAGAATTATTTAAAATA
TACATGAAATTCCTTTCTGATATAGAAACCATTTCTGGAGTGTTTACACTGGTTTGATGT
TTACATTACTCTGACACAGTGCCTCAAATGCCTCTGTGACCAAATTTGTCTCCAATCACA
TAGTTCTTTTCCTGTAATACCATGTTACAGGAAGTTCTCTCAGAGACCCAAGTGCAGCTA
TGTATTCCAATATCTTAGGCAAAGAGTATAGGGATGTTATTCAAATCTGGAAATTATTAC
CACCATCTATCTCCCAGCTCACTTCCTGTGGCATGGGCATTACTTGAGACTCGAACTGTG
ATTAGGTACAAGGTTACCTCTTACTGTAAAAATAGAAAAAAATACTTTGAAAAATGTATC
AAAAATAGTTGAGAGAACATGTTTGTCTTGGTGTGATGAGGGCAACAAGTCACAAACTGG
CAGAGAAAATGCTAAATGCTGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAAAAATAATACCTACCTATAAATAAAAATTTGATCTAAAAAAATAGTTCCTCTGTCA
AATTTGACCTAAGTTCCCAAACTCTGTGTAACCATTACTAGTGATTCCTTCTTTTATTAT
TTCGGAATTAATTATTTTGTAGAATTGATTTTACAATTTCAAGTTGATTTGGGGCCATGA
AGTATACAGCCTGCTTTGAAAGAGTCTTATACACCCTTTAACATACAACAATATTTATTG
CTCATCATGTCCCAAATACTTTAGTAAAGCATATTGTTTCTTGGAGAATTATTTAAAATA
TACATGAAATTCCTTTCTGATATAGAAACCATTTCTGGAGTGTTTACACTGGTTTGATGT
TTACATTACTCTGACACAGTGCCTCAAATGCCTCTGTGACCAAATTTGTCTCCAATCACA
TAGTTCTTTTCCTGTAATACCATGTTACAGGAAGTTCTCTCAGAGACCCAAGTGCAGCTA
TGTATTCCAATATCTTAGGCAAAGAGTATAGGGATGTTATTCAAATCTGGAAATTATTAC
CACCATCTATCTCCCAGCTCACTTCCTGTGGCATGGGCATTACTTGAGACTCGAACTGTG
ATTAGGTACAAGGTTACCTCTTACTGTAAAAATAGAAAAAAATACTTTGAAAAATGTATC
AAAAATAGTTGAGAGAACATGTTTGTCTTGGTGTGATGAGGGCAACAAGTCACAAACTGG
CAGAGAAAATGCTAAATGCTGGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               367-484, - strand, RNAz p=0.977511

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               367-484, - strand, RNAz p=0.977511

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-742, gnl|bosTau2|chr24 (35372169-35371464)
               

               
               2-742, gnl|Hg17|chr18 (50710114-50710879)
               

               
               2-742, gnl|Mm7|chr18 (70374359-70373609)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-742, gnl|bosTau2|chr24 (35372169-35371464)
               

               
               2-742, gnl|Hg17|chr18 (50710114-50710879)
               

               
               2-742, gnl|Mm7|chr18 (70374359-70373609)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	2-742, gnl\|bosTau2\|chr24 (35372169-35371464)
	2-742, gnl\|Hg17\|chr18 (50710114-50710879)
	2-742, gnl\|Mm7\|chr18 (70374359-70373609)