Non-Coding RNA Search

Ss1.1-rpigcb_11960.5

Sequence:


               
               GAAAGCAAGGACCATCCTACTGTTGAAATGTTGGGTTAAATTGTGTTTTATAATATGTAG
CACACTGTATCTAAAGACATATGTATTGTATTTGTCTTAATGGAAGTGCCTCCCGCAGCA
GAAACACTTACTATTAATTGTGACATTTTAAAAGAGTTTGCTGCAGAAGTGGTTTCTTCT
TCAGTAGGAAATGGTTAGACTCGCCTCAGTTCTTAACAAGTTTCTGAAGAGAGTAGGCTG
TAGAAAAACAAGTATTAGGTTTTAAATTTTATAATGTTCCCCATTTAATCACATTGTTTG
CTAGTAAACAAAAAACTAACCAGCTTTTACAAGAGCAGTCTAGATCTTTATTTTGTATAA
GTTCGTTTTAATTCATTGGTTGATCTGCACAGATTTTAGAAGAAACCATTGATTTTAGGT
ATAGGATATTTTTTGTTGGCATTATGTTTTAGATATGAAATCATAGCTAAAGTGAACTGT
AGACAAGAAGGTCTTCCTTGAAACAGGGATGATATTCAGGTTATTATAAGTATTTAGGCT
TGAAGCATAGAGCTACTGTAGAATTAAAAAAAAATCTCTGTAGGACTTTCTGGGACTTCA
GTACCATTTGCACCTGCAATGAAGGGCTTAAATAGGAGAAAATAATGGAAAATTAAATAT
TAATGTAAGGAAAGCAAAAGCTGCACTAAAATTTTTAAAAGGAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGCAAGGACCATCCTACTGTTGAAATGTTGGGTTAAATTGTGTTTTATAATATGTAG
CACACTGTATCTAAAGACATATGTATTGTATTTGTCTTAATGGAAGTGCCTCCCGCAGCA
GAAACACTTACTATTAATTGTGACATTTTAAAAGAGTTTGCTGCAGAAGTGGTTTCTTCT
TCAGTAGGAAATGGTTAGACTCGCCTCAGTTCTTAACAAGTTTCTGAAGAGAGTAGGCTG
TAGAAAAACAAGTATTAGGTTTTAAATTTTATAATGTTCCCCATTTAATCACATTGTTTG
CTAGTAAACAAAAAACTAACCAGCTTTTACAAGAGCAGTCTAGATCTTTATTTTGTATAA
GTTCGTTTTAATTCATTGGTTGATCTGCACAGATTTTAGAAGAAACCATTGATTTTAGGT
ATAGGATATTTTTTGTTGGCATTATGTTTTAGATATGAAATCATAGCTAAAGTGAACTGT
AGACAAGAAGGTCTTCCTTGAAACAGGGATGATATTCAGGTTATTATAAGTATTTAGGCT
TGAAGCATAGAGCTACTGTAGAATTAAAAAAAAATCTCTGTAGGACTTTCTGGGACTTCA
GTACCATTTGCACCTGCAATGAAGGGCTTAAATAGGAGAAAATAATGGAAAATTAAATAT
TAATGTAAGGAAAGCAAAAGCTGCACTAAAATTTTTAAAAGGAAAAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               592-708, + strand, RNAz p=0.560119

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               592-708, + strand, RNAz p=0.560119

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK126103, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK126103, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-708, gnl|bosTau2|chr10 (39423476-39422760)
               

               
               1-708, gnl|Hg17|chr15 (54172873-54172194)
               

               
               1-708, gnl|Mm7|chr9 (72652662-72653348)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr10 (39423476-39422760)
               

               
               1-708, gnl|Hg17|chr15 (54172873-54172194)
               

               
               1-708, gnl|Mm7|chr9 (72652662-72653348)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               cty (0.10408)

	1-708, gnl\|bosTau2\|chr10 (39423476-39422760)
	1-708, gnl\|Hg17\|chr15 (54172873-54172194)
	1-708, gnl\|Mm7\|chr9 (72652662-72653348)