Non-Coding RNA Search

Ss1.1-rpigcb_11980.5

Sequence:


               
               ATAGATGAGGGCAGATTTGATTCCCTCTTAGCAACCTCAGGCTCTTCCTAGGTATGATGT
AGCGTTGCCTCAGGAGAAGAGAGAAATAGAAGTTCGCCGACTGCGACAGAGATAGGAGGA
AAGCGCAGGCTCCATCTTGTGCTTTGAAGCCCATAGGGCGCCATGTTAATTACGGGAGCG
AGCGGCCATTTCCCCGCTCCTCGTCCTTTCGCCCGGCTCCAATTTCCAGAGCCAAGCCCC
CTGCTGCTCAATGGACACCTCCAGCCCAGACGCGTGGCCTTCGCCTTTCCCCAGGGAGGA
AGAGAAACCTCTGGCCTTACCTCCTCCTGTTCCCCAGGGCCGCCGAGGCCAACGTCCTGC
GGGGGCCACCTCCTCCAATCAGACCCTCAAGACCACCCTCCCTCGCAAGCGGGGCCGCCC
CCCCAAGTCAGGGCAGGAGCCCCCAGTGGCGCAGGGGGTCACCGCCCCGGTGGTCAGCGA
TGGTGGCAGTGACCTCCTGTTGATCGATGATCAGGGTGTACCCTACACAGTCTCTGAAGG
GTCCGTGGCGAGTGGGCCTGAGAGCTCCAGCCCTAAGAAAGCCCCGCACTTCTGCCTGGT
GTGCCTTCGGGCCTTCCCCTACCTCTCCGACCTGGAGCGCCACAGCATCTCGCACTCAGA
GCTGAAGCCGCACGAGTGCAAGGATTGCGGCAAGACCTTCAAGCGGTCCAGCCATCTGCG
GCGGCACTGCAACATCCATGCCGGCCTTCGGCCCTTCCGCTGCCCGCTCTGCCCACGCCG
CTTCCGGGAGGCAGGCGAGCTGGCCCACCACCACCGCGTCCACTCTGGGGAGCGCCCCTA
CCAGTGCCCCATCTGCCGGCTGCGTTTCATGGAGGTCAACACGCTGCGGCGCCATATCAA
ACGCAAGCACCCCGAGGCCATGGAGGTACCCCTGTGTCTTCCGGACCCAGAGCCTGAACC
ACTGTGGGATGACGACGGCATCCCAGCCACGGCAGAGGCGGAGGAGGGGGGGCTGGAGGG
GAAAGAGCTGGCCTGCCCCAGGCCTCCGGCCACTGCTCCCCAGGCTGAGATTAGAGCTGG
GAGTCGGGCTGGTGCTGGGCCTGAGCAGGGAGGCCCGGACACCCTCACATCTGGTGGTCT
TCCCGTTGTGGGAGGGGGTTGGGGGTGCGGACCTCAACTTCTGGATCCTGCTGCCTTCTG
CCACCCTCCCCCGGACTGACAGGCCTTTGGAGGCGGGGGCTGCGGAAATAAATCTCTGCC
TATTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGATGAGGGCAGATTTGATTCCCTCTTAGCAACCTCAGGCTCTTCCTAGGTATGATGT
AGCGTTGCCTCAGGAGAAGAGAGAAATAGAAGTTCGCCGACTGCGACAGAGATAGGAGGA
AAGCGCAGGCTCCATCTTGTGCTTTGAAGCCCATAGGGCGCCATGTTAATTACGGGAGCG
AGCGGCCATTTCCCCGCTCCTCGTCCTTTCGCCCGGCTCCAATTTCCAGAGCCAAGCCCC
CTGCTGCTCAATGGACACCTCCAGCCCAGACGCGTGGCCTTCGCCTTTCCCCAGGGAGGA
AGAGAAACCTCTGGCCTTACCTCCTCCTGTTCCCCAGGGCCGCCGAGGCCAACGTCCTGC
GGGGGCCACCTCCTCCAATCAGACCCTCAAGACCACCCTCCCTCGCAAGCGGGGCCGCCC
CCCCAAGTCAGGGCAGGAGCCCCCAGTGGCGCAGGGGGTCACCGCCCCGGTGGTCAGCGA
TGGTGGCAGTGACCTCCTGTTGATCGATGATCAGGGTGTACCCTACACAGTCTCTGAAGG
GTCCGTGGCGAGTGGGCCTGAGAGCTCCAGCCCTAAGAAAGCCCCGCACTTCTGCCTGGT
GTGCCTTCGGGCCTTCCCCTACCTCTCCGACCTGGAGCGCCACAGCATCTCGCACTCAGA
GCTGAAGCCGCACGAGTGCAAGGATTGCGGCAAGACCTTCAAGCGGTCCAGCCATCTGCG
GCGGCACTGCAACATCCATGCCGGCCTTCGGCCCTTCCGCTGCCCGCTCTGCCCACGCCG
CTTCCGGGAGGCAGGCGAGCTGGCCCACCACCACCGCGTCCACTCTGGGGAGCGCCCCTA
CCAGTGCCCCATCTGCCGGCTGCGTTTCATGGAGGTCAACACGCTGCGGCGCCATATCAA
ACGCAAGCACCCCGAGGCCATGGAGGTACCCCTGTGTCTTCCGGACCCAGAGCCTGAACC
ACTGTGGGATGACGACGGCATCCCAGCCACGGCAGAGGCGGAGGAGGGGGGGCTGGAGGG
GAAAGAGCTGGCCTGCCCCAGGCCTCCGGCCACTGCTCCCCAGGCTGAGATTAGAGCTGG
GAGTCGGGCTGGTGCTGGGCCTGAGCAGGGAGGCCCGGACACCCTCACATCTGGTGGTCT
TCCCGTTGTGGGAGGGGGTTGGGGGTGCGGACCTCAACTTCTGGATCCTGCTGCCTTCTG
CCACCCTCCCCCGGACTGACAGGCCTTTGGAGGCGGGGGCTGCGGAAATAAATCTCTGCC
TATTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96C55_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96C55_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               200-438, - strand, RNAz p=0.965746
               

               
               627-746, - strand, RNAz p=0.736006
               

               
               1012-1265, + strand, RNAz p=0.973277

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-438, - strand, RNAz p=0.965746
               

               
               627-746, - strand, RNAz p=0.736006
               

               
               1012-1265, + strand, RNAz p=0.973277

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_153219, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_153219, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-145, gnl|bosTau2|chr18 (54683238-54683096)
               

               
               3-145, gnl|Hg17|chr19 (60802978-60803120)
               

               
               3-145, gnl|Mm7|chr7 (4590815-4590949)
               


               
               200-1265, gnl|bosTau2|chr18 (54680936-54679862)
               

               
               200-1265, gnl|Hg17|chr19 (60805241-60806314)
               

               
               200-1265, gnl|Mm7|chr7 (4593283-4594344)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-145, gnl|bosTau2|chr18 (54683238-54683096)
               

               
               3-145, gnl|Hg17|chr19 (60802978-60803120)
               

               
               3-145, gnl|Mm7|chr7 (4590815-4590949)
               


               
               200-1265, gnl|bosTau2|chr18 (54680936-54679862)
               

               
               200-1265, gnl|Hg17|chr19 (60805241-60806314)
               

               
               200-1265, gnl|Mm7|chr7 (4593283-4594344)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	200-438, - strand, RNAz p=0.965746
	627-746, - strand, RNAz p=0.736006
	1012-1265, + strand, RNAz p=0.973277

	3-145, gnl\|bosTau2\|chr18 (54683238-54683096)
	3-145, gnl\|Hg17\|chr19 (60802978-60803120)
	3-145, gnl\|Mm7\|chr7 (4590815-4590949)

	200-1265, gnl\|bosTau2\|chr18 (54680936-54679862)
	200-1265, gnl\|Hg17\|chr19 (60805241-60806314)
	200-1265, gnl\|Mm7\|chr7 (4593283-4594344)

	ton (0.1755)
	fhi (0.169578)
	nca (0.136874)
	eep (0.122564)
	med (0.116252)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)