Non-Coding RNA Search

Ss1.1-rpigcb_12083.5

Sequence:


               
               CCCGACCCAGGCTCAGAGGGATCGCCCACCTGCTGCGCCCAGAACAGCCCTCTCTGCCAC
AGGGGCTGGGGCGTCTGGAGTGGTGGCGTTTGCAGAGCTCTTGCTTCGGCCTCGCTGACT
GCTCACCTGCCGGCCGGCCAGCCTTCCAGGCCCCAGGCACAGCCTGCCTTCCTTCCTAGG
GAAGCCCAGAGCTGAAGCGCTGCAGCATGGCGCGCGGCTGCCTCCAGGGCGTCAAGTACC
TCATGTTCGCCTTCAACCTGCTCTTCTGGCTAGGAGGCTGCGGCATCCTGGGTGTCGGCA
TCTGGCTGGCTGCCACGCAGGGCAACTTTGCCACCCTGTCCTCCTCCTTCCCGTCGCTGT
CGGCCGCCAACCTGCTCATCGCCACCGGCACCCTCGTGATGGCCATTGGCTTCGTGGGCT
GCATCGGCGCCATCAAGGAGAACAGATGCCTTCTGCTCACCTTCTTCGTGGTGCTGCTGC
TGGTGTTCCTGCTGGAGGCCACCGTTGCCGTCCTCTTCTTCACCTACACGGACAAGATCG
ACAGGTACGCCCAGCGGGACCTGAAGAAGGGCCTGCACCTGTACGGCACCCCGGGCAATG
TGGGCCTCACCAACGCCTGGAGCATCATCCAGACCGACTTCCGCTGCTGCGGGGTCTCCA
ACTACACCGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGACCCAGGCTCAGAGGGATCGCCCACCTGCTGCGCCCAGAACAGCCCTCTCTGCCAC
AGGGGCTGGGGCGTCTGGAGTGGTGGCGTTTGCAGAGCTCTTGCTTCGGCCTCGCTGACT
GCTCACCTGCCGGCCGGCCAGCCTTCCAGGCCCCAGGCACAGCCTGCCTTCCTTCCTAGG
GAAGCCCAGAGCTGAAGCGCTGCAGCATGGCGCGCGGCTGCCTCCAGGGCGTCAAGTACC
TCATGTTCGCCTTCAACCTGCTCTTCTGGCTAGGAGGCTGCGGCATCCTGGGTGTCGGCA
TCTGGCTGGCTGCCACGCAGGGCAACTTTGCCACCCTGTCCTCCTCCTTCCCGTCGCTGT
CGGCCGCCAACCTGCTCATCGCCACCGGCACCCTCGTGATGGCCATTGGCTTCGTGGGCT
GCATCGGCGCCATCAAGGAGAACAGATGCCTTCTGCTCACCTTCTTCGTGGTGCTGCTGC
TGGTGTTCCTGCTGGAGGCCACCGTTGCCGTCCTCTTCTTCACCTACACGGACAAGATCG
ACAGGTACGCCCAGCGGGACCTGAAGAAGGGCCTGCACCTGTACGGCACCCCGGGCAATG
TGGGCCTCACCAACGCCTGGAGCATCATCCAGACCGACTTCCGCTGCTGCGGGGTCTCCA
ACTACACCGACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52789455|gb|AAH83070.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52789455|gb|AAH83070.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               535-654, - strand, RNAz p=0.55001

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               535-654, - strand, RNAz p=0.55001

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK126635, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK126635, -

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               269-461, gnl|bosTau2|chr18 (54556410-54556219)
               

               
               269-461, gnl|Hg17|chr11 (852549-852741)
               

               
               269-461, gnl|Mm7|chr7 (137906815-137907007)
               


               
               535-654, gnl|bosTau2|chr18 (54555065-54554946)
               

               
               535-654, gnl|canFam2|chr18 (48262976-48263104)
               

               
               535-654, gnl|danRer3|chr11 (9080760-9080870)
               

               
               535-654, gnl|echTel1|scaffold_234125 (2025-2139)
               

               
               535-654, gnl|fr1|chrUn (5396454-5396574)
               

               
               535-654, gnl|galGal2|chr5 (12769633-12769522)
               

               
               535-654, gnl|hg17|chr11 (855500-855628)
               

               
               535-654, gnl|Hg17|chr11 (855511-855630)
               

               
               535-654, gnl|loxAfr1|scaffold_67351 (3253-3123)
               

               
               535-654, gnl|mm7|chr7 (137908831-137908951)
               

               
               535-654, gnl|Mm7|chr7 (137908834-137908961)
               

               
               535-654, gnl|monDom2|scaffold_363 (50401-50529)
               

               
               535-654, gnl|oryCun1|scaffold_211815 (17001-17129)
               

               
               535-654, gnl|panTro1|chr9 (932528-932656)
               

               
               535-654, gnl|rheMac2|chr11 (3406035-3406165)
               

               
               535-654, gnl|rn3|chr1 (201832842-201832962)
               

               
               535-654, gnl|tetNig1|chr5 (10670385-10670275)
               

               
               535-654, gnl|xenTro1|scaffold_682 (405238-405352)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               269-461, gnl|bosTau2|chr18 (54556410-54556219)
               

               
               269-461, gnl|Hg17|chr11 (852549-852741)
               

               
               269-461, gnl|Mm7|chr7 (137906815-137907007)
               


               
               535-654, gnl|bosTau2|chr18 (54555065-54554946)
               

               
               535-654, gnl|canFam2|chr18 (48262976-48263104)
               

               
               535-654, gnl|danRer3|chr11 (9080760-9080870)
               

               
               535-654, gnl|echTel1|scaffold_234125 (2025-2139)
               

               
               535-654, gnl|fr1|chrUn (5396454-5396574)
               

               
               535-654, gnl|galGal2|chr5 (12769633-12769522)
               

               
               535-654, gnl|hg17|chr11 (855500-855628)
               

               
               535-654, gnl|Hg17|chr11 (855511-855630)
               

               
               535-654, gnl|loxAfr1|scaffold_67351 (3253-3123)
               

               
               535-654, gnl|mm7|chr7 (137908831-137908951)
               

               
               535-654, gnl|Mm7|chr7 (137908834-137908961)
               

               
               535-654, gnl|monDom2|scaffold_363 (50401-50529)
               

               
               535-654, gnl|oryCun1|scaffold_211815 (17001-17129)
               

               
               535-654, gnl|panTro1|chr9 (932528-932656)
               

               
               535-654, gnl|rheMac2|chr11 (3406035-3406165)
               

               
               535-654, gnl|rn3|chr1 (201832842-201832962)
               

               
               535-654, gnl|tetNig1|chr5 (10670385-10670275)
               

               
               535-654, gnl|xenTro1|scaffold_682 (405238-405352)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	269-461, gnl\|bosTau2\|chr18 (54556410-54556219)
	269-461, gnl\|Hg17\|chr11 (852549-852741)
	269-461, gnl\|Mm7\|chr7 (137906815-137907007)

	535-654, gnl\|bosTau2\|chr18 (54555065-54554946)
	535-654, gnl\|canFam2\|chr18 (48262976-48263104)
	535-654, gnl\|danRer3\|chr11 (9080760-9080870)
	535-654, gnl\|echTel1\|scaffold_234125 (2025-2139)
	535-654, gnl\|fr1\|chrUn (5396454-5396574)
	535-654, gnl\|galGal2\|chr5 (12769633-12769522)
	535-654, gnl\|hg17\|chr11 (855500-855628)
	535-654, gnl\|Hg17\|chr11 (855511-855630)
	535-654, gnl\|loxAfr1\|scaffold_67351 (3253-3123)
	535-654, gnl\|mm7\|chr7 (137908831-137908951)
	535-654, gnl\|Mm7\|chr7 (137908834-137908961)
	535-654, gnl\|monDom2\|scaffold_363 (50401-50529)
	535-654, gnl\|oryCun1\|scaffold_211815 (17001-17129)
	535-654, gnl\|panTro1\|chr9 (932528-932656)
	535-654, gnl\|rheMac2\|chr11 (3406035-3406165)
	535-654, gnl\|rn3\|chr1 (201832842-201832962)
	535-654, gnl\|tetNig1\|chr5 (10670385-10670275)
	535-654, gnl\|xenTro1\|scaffold_682 (405238-405352)