Ss1.1-rpigcb_12114.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACACCTCAGTCCACGGTGTGGCCCACCACTTCGTGCAGTCGGCGTTCAAAGCTTTTGAC TTTGCTCCTCCCGTGGCTGTTCCTGAACAGAAGGATCCCGATCCCGAGTTCCCAACAGTG ACGCACCCGAATCCTGAAGAGGGTGAAAAGGCCTTGGCTTTATCTTTTGCTTTGGCTGAC AGAGCCAAGGCCAAAATCATTTTAGCAAACGACCCAGATGCTGATAGACTTGCTGTGGCA GAAAAGCAAGACAGCGGGGATTGGAAAGTGTTTTCCGGCAATGAGTTGGGGGCCCTCTTG GGCTGGTGGCTCTTTACTTGTTGGAAAGAAAAGAACCAAGATCCCAGCGCTCTCAAAGAC ACATACATGCTGTCCAGCACCGTGTCCTCCAGAATCCTGCAGGCCATTGCCTTAAAGGAG GGTTTTCACTTCGAGGAAACTTTGACAGGCTTCAAGTGGATGGGAAACCGGGCCAAGCAG CTAATGGAGCAGGGGAAAAATGTCTTATTTGCATTTGAAGAAGCTATTGGATATATGTGC TGCCCTTTCGTTCTGGACAAAGATGGAGTCAGTGCTGCCGTCATAAGCGCAGAGTTGGCC AGCTTTCTAGCAACCAAGAATTTGTCTTTGTCTCAGCAGCTAAATGCCATCTATGTTGAG TATGGCTACCATGTTACCAAAGGTACATATTTTATCTGCCATGATCAAGGCAATGTTAAA AAATTATTTGAAAACCTTAGAAACTACGATGGGAAGAATAATTATCCAAAAACTTGTGGC AGATTTGAAATTTCTGGCATTAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACACCTCAGTCCACGGTGTGGCCCACCACTTCGTGCAGTCGGCGTTCAAAGCTTTTGAC TTTGCTCCTCCCGTGGCTGTTCCTGAACAGAAGGATCCCGATCCCGAGTTCCCAACAGTG ACGCACCCGAATCCTGAAGAGGGTGAAAAGGCCTTGGCTTTATCTTTTGCTTTGGCTGAC AGAGCCAAGGCCAAAATCATTTTAGCAAACGACCCAGATGCTGATAGACTTGCTGTGGCA GAAAAGCAAGACAGCGGGGATTGGAAAGTGTTTTCCGGCAATGAGTTGGGGGCCCTCTTG GGCTGGTGGCTCTTTACTTGTTGGAAAGAAAAGAACCAAGATCCCAGCGCTCTCAAAGAC ACATACATGCTGTCCAGCACCGTGTCCTCCAGAATCCTGCAGGCCATTGCCTTAAAGGAG GGTTTTCACTTCGAGGAAACTTTGACAGGCTTCAAGTGGATGGGAAACCGGGCCAAGCAG CTAATGGAGCAGGGGAAAAATGTCTTATTTGCATTTGAAGAAGCTATTGGATATATGTGC TGCCCTTTCGTTCTGGACAAAGATGGAGTCAGTGCTGCCGTCATAAGCGCAGAGTTGGCC AGCTTTCTAGCAACCAAGAATTTGTCTTTGTCTCAGCAGCTAAATGCCATCTATGTTGAG TATGGCTACCATGTTACCAAAGGTACATATTTTATCTGCCATGATCAAGGCAATGTTAAA AAATTATTTGAAAACCTTAGAAACTACGATGGGAAGAATAATTATCCAAAAACTTGTGGC AGATTTGAAATTTCTGGCATTAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 529-662, + strand, RNAz p=0.92997 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 529-662, + strand, RNAz p=0.92997 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 1-157, gnl|bosTau2|chr6 (29655547-29655391) | |
| 1-157, gnl|canFam2|chr3 (77189442-77189236) | |
| 1-157, gnl|danRer3|chr15 (7897357-7897559) | |
| 1-157, gnl|dasNov1|scaffold_162080 (792-586) | |
| 1-157, gnl|echTel1|scaffold_286228 (20657-20451) | |
| 1-157, gnl|fr1|chrUn (236895317-236895519) | |
| 1-157, gnl|galGal2|chrUn (150075564-150075770) | |
| 1-157, gnl|hg17|chr4 (37668537-37668743) | |
| 1-157, gnl|Hg17|chr4 (37668585-37668741) | |
| 1-157, gnl|loxAfr1|scaffold_3139 (11784-11990) | |
| 1-157, gnl|mm7|chr5 (63459639-63459845) | |
| 1-157, gnl|Mm7|chr5 (63459687-63459843) | |
| 1-157, gnl|monDom2|scaffold_26 (2695244-2695450) | |
| 1-157, gnl|oryCun1|scaffold_186875 (3474-3680) | |
| 1-157, gnl|panTro1|chr3 (40334750-40334956) | |
| 1-157, gnl|rheMac2|chr5 (32822177-32822383) | |
| 1-157, gnl|rn3|chr14 (46854867-46854661) | |
| 1-157, gnl|tetNig1|chrUn_random (51163693-51163899) | |
| 1-157, gnl|xenTro1|scaffold_152 (737167-737365) | |
| 251-439, gnl|bosTau2|chr15 (34222800-34222612) | |
| 251-439, gnl|canFam2|chr21 (26963910-26963687) | |
| 251-439, gnl|danRer3|chr15 (7898284-7898068) | |
| 251-439, gnl|dasNov1|scaffold_9416 (77811-77588) | |
| 251-439, gnl|echTel1|scaffold_301659 (87606-87387) | |
| 251-439, gnl|fr1|chrUn (236896011-236895797) | |
| 251-439, gnl|galGal2|chrUn (150078334-150078132) | |
| 251-439, gnl|hg17|chr11 (73734142-73734365) | |
| 251-439, gnl|Hg17|chr11 (73734346-73734158) | |
| 251-439, gnl|loxAfr1|scaffold_3139 (15155-14957) | |
| 251-439, gnl|mm7|chr7 (96309364-96309133) | |
| 251-439, gnl|Mm7|chr7 (96309149-96309334) | |
| 251-439, gnl|monDom2|scaffold_74 (3082556-3082327) | |
| 251-439, gnl|oryCun1|scaffold_213188 (15063-15285) | |
| 251-439, gnl|panTro1|chr9 (75019063-75019286) | |
| 251-439, gnl|rheMac2|chr14 (72526319-72526542) | |
| 251-439, gnl|rn3|chr1 (157719728-157719497) | |
| 251-439, gnl|tetNig1|chrUn_random (135709222-135709420) | |
| 251-439, gnl|xenTro1|scaffold_152 (738353-738138) | |
| 529-662, gnl|bosTau2|chr6 (29648963-29648830) | |
| 529-662, gnl|canFam2|chr3 (77184635-77184457) | |
| 529-662, gnl|danRer3|chr15 (7899741-7899880) | |
| 529-662, gnl|echTel1|scaffold_286228 (17160-16988) | |
| 529-662, gnl|fr1|chrUn (236896488-236896648) | |
| 529-662, gnl|galGal2|chrUn (150079042-150079191) | |
| 529-662, gnl|hg17|chr4 (37672697-37672875) | |
| 529-662, gnl|Hg17|chr4 (37672708-37672841) | |
| 529-662, gnl|loxAfr1|scaffold_3139 (17360-17539) | |
| 529-662, gnl|mm7|chr5 (63464403-63464568) | |
| 529-662, gnl|Mm7|chr5 (63464413-63464546) | |
| 529-662, gnl|monDom2|scaffold_26 (2699178-2699352) | |
| 529-662, gnl|oryCun1|scaffold_186875 (7821-7992) | |
| 529-662, gnl|panTro1|chr3 (40338899-40339077) | |
| 529-662, gnl|rheMac2|chr5 (32826310-32826488) | |
| 529-662, gnl|rn3|chr14 (46850556-46850392) | |
| 529-662, gnl|tetNig1|chrUn_random (51164989-51165136) | |
| 529-662, gnl|xenTro1|scaffold_152 (739232-739400) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-157, gnl|bosTau2|chr6 (29655547-29655391) | |
| 1-157, gnl|canFam2|chr3 (77189442-77189236) | |
| 1-157, gnl|danRer3|chr15 (7897357-7897559) | |
| 1-157, gnl|dasNov1|scaffold_162080 (792-586) | |
| 1-157, gnl|echTel1|scaffold_286228 (20657-20451) | |
| 1-157, gnl|fr1|chrUn (236895317-236895519) | |
| 1-157, gnl|galGal2|chrUn (150075564-150075770) | |
| 1-157, gnl|hg17|chr4 (37668537-37668743) | |
| 1-157, gnl|Hg17|chr4 (37668585-37668741) | |
| 1-157, gnl|loxAfr1|scaffold_3139 (11784-11990) | |
| 1-157, gnl|mm7|chr5 (63459639-63459845) | |
| 1-157, gnl|Mm7|chr5 (63459687-63459843) | |
| 1-157, gnl|monDom2|scaffold_26 (2695244-2695450) | |
| 1-157, gnl|oryCun1|scaffold_186875 (3474-3680) | |
| 1-157, gnl|panTro1|chr3 (40334750-40334956) | |
| 1-157, gnl|rheMac2|chr5 (32822177-32822383) | |
| 1-157, gnl|rn3|chr14 (46854867-46854661) | |
| 1-157, gnl|tetNig1|chrUn_random (51163693-51163899) | |
| 1-157, gnl|xenTro1|scaffold_152 (737167-737365) | |
| 251-439, gnl|bosTau2|chr15 (34222800-34222612) | |
| 251-439, gnl|canFam2|chr21 (26963910-26963687) | |
| 251-439, gnl|danRer3|chr15 (7898284-7898068) | |
| 251-439, gnl|dasNov1|scaffold_9416 (77811-77588) | |
| 251-439, gnl|echTel1|scaffold_301659 (87606-87387) | |
| 251-439, gnl|fr1|chrUn (236896011-236895797) | |
| 251-439, gnl|galGal2|chrUn (150078334-150078132) | |
| 251-439, gnl|hg17|chr11 (73734142-73734365) | |
| 251-439, gnl|Hg17|chr11 (73734346-73734158) | |
| 251-439, gnl|loxAfr1|scaffold_3139 (15155-14957) | |
| 251-439, gnl|mm7|chr7 (96309364-96309133) | |
| 251-439, gnl|Mm7|chr7 (96309149-96309334) | |
| 251-439, gnl|monDom2|scaffold_74 (3082556-3082327) | |
| 251-439, gnl|oryCun1|scaffold_213188 (15063-15285) | |
| 251-439, gnl|panTro1|chr9 (75019063-75019286) | |
| 251-439, gnl|rheMac2|chr14 (72526319-72526542) | |
| 251-439, gnl|rn3|chr1 (157719728-157719497) | |
| 251-439, gnl|tetNig1|chrUn_random (135709222-135709420) | |
| 251-439, gnl|xenTro1|scaffold_152 (738353-738138) | |
| 529-662, gnl|bosTau2|chr6 (29648963-29648830) | |
| 529-662, gnl|canFam2|chr3 (77184635-77184457) | |
| 529-662, gnl|danRer3|chr15 (7899741-7899880) | |
| 529-662, gnl|echTel1|scaffold_286228 (17160-16988) | |
| 529-662, gnl|fr1|chrUn (236896488-236896648) | |
| 529-662, gnl|galGal2|chrUn (150079042-150079191) | |
| 529-662, gnl|hg17|chr4 (37672697-37672875) | |
| 529-662, gnl|Hg17|chr4 (37672708-37672841) | |
| 529-662, gnl|loxAfr1|scaffold_3139 (17360-17539) | |
| 529-662, gnl|mm7|chr5 (63464403-63464568) | |
| 529-662, gnl|Mm7|chr5 (63464413-63464546) | |
| 529-662, gnl|monDom2|scaffold_26 (2699178-2699352) | |
| 529-662, gnl|oryCun1|scaffold_186875 (7821-7992) | |
| 529-662, gnl|panTro1|chr3 (40338899-40339077) | |
| 529-662, gnl|rheMac2|chr5 (32826310-32826488) | |
| 529-662, gnl|rn3|chr14 (46850556-46850392) | |
| 529-662, gnl|tetNig1|chrUn_random (51164989-51165136) | |
| 529-662, gnl|xenTro1|scaffold_152 (739232-739400) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |