Non-Coding RNA Search

Ss1.1-rpigcb_12178.5

Sequence:


               
               CAGAACTAATACATTTCTACTACATCATAAATATATTTTTCATGTTTTGAATTATCTAAA
AATTGGGGGAAGGTCCATAATAATGAAGATTGGTTTATGATATTCTTTTGCTGGTTTGGC
TTTTAAGTGTCTTTTTGGATTATTTCTCCTATTGAACATGGCAAAAATACTAGATTTCTG
TTAAGATTTCATGGTGGGCCAATAGCTTAATCTTTCATTAATAATCTGTATTATTTCTGT
GTCCTCTCATCAAAGTGTGACAATTAACTGTATGAGGATATAAGTCCTCAAATACCTGTT
AAGATTAAATTATGCAAATCATCAAAAAATTATATACTTTTGGAAATTTAGTTCAACACG
AACTAAATGGTGTGCTGTTTGGAAACTCAGTTTAAGACAAACTAAAGTGGTATGTTTGTT
GATGCCAAAATGTTCAGCTTCAGTAAATGTACTAAGAAGCTCTTGTGCCTTGTATGCACT
GTTAAAAAAAAATGGTTTATTTTTTTCTTTTTTAATTTGACAGAGTGCAAGTTTTGTAAA
TGTTAGTGGTTAGAATATGACATATACATTTTTTGGTATTGATTTTGAGAATTTAAAGCA
GATTACCTTTTAAGACTACAAAGCTAAGGAAATGGTATTTAATCAAAGAGAAAATGGTGT
TTAGTTTTCAAAATGTGAATTAGACAAACACAAAAGACTAGAAGACCAGAGGATAATGGA
GTAAAAGACCCTTGCACTTACTCATCCTTCCCTAGAATATGAAATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAACTAATACATTTCTACTACATCATAAATATATTTTTCATGTTTTGAATTATCTAAA
AATTGGGGGAAGGTCCATAATAATGAAGATTGGTTTATGATATTCTTTTGCTGGTTTGGC
TTTTAAGTGTCTTTTTGGATTATTTCTCCTATTGAACATGGCAAAAATACTAGATTTCTG
TTAAGATTTCATGGTGGGCCAATAGCTTAATCTTTCATTAATAATCTGTATTATTTCTGT
GTCCTCTCATCAAAGTGTGACAATTAACTGTATGAGGATATAAGTCCTCAAATACCTGTT
AAGATTAAATTATGCAAATCATCAAAAAATTATATACTTTTGGAAATTTAGTTCAACACG
AACTAAATGGTGTGCTGTTTGGAAACTCAGTTTAAGACAAACTAAAGTGGTATGTTTGTT
GATGCCAAAATGTTCAGCTTCAGTAAATGTACTAAGAAGCTCTTGTGCCTTGTATGCACT
GTTAAAAAAAAATGGTTTATTTTTTTCTTTTTTAATTTGACAGAGTGCAAGTTTTGTAAA
TGTTAGTGGTTAGAATATGACATATACATTTTTTGGTATTGATTTTGAGAATTTAAAGCA
GATTACCTTTTAAGACTACAAAGCTAAGGAAATGGTATTTAATCAAAGAGAAAATGGTGT
TTAGTTTTCAAAATGTGAATTAGACAAACACAAAAGACTAGAAGACCAGAGGATAATGGA
GTAAAAGACCCTTGCACTTACTCATCCTTCCCTAGAATATGAAATTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               331-526, + strand, RNAz p=0.944619

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               331-526, + strand, RNAz p=0.944619

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_016353, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_016353, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-768, gnl|bosTau2|chr27 (12707530-12706769)
               

               
               1-768, gnl|Hg17|chr8 (17122793-17123551)
               

               
               1-768, gnl|Mm7|chr8 (39274887-39275617)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr27 (12707530-12706769)
               

               
               1-768, gnl|Hg17|chr8 (17122793-17123551)
               

               
               1-768, gnl|Mm7|chr8 (39274887-39275617)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eye (0.170503)
               

               
               ski (0.146735)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               cty (0.10408)

	1-768, gnl\|bosTau2\|chr27 (12707530-12706769)
	1-768, gnl\|Hg17\|chr8 (17122793-17123551)
	1-768, gnl\|Mm7\|chr8 (39274887-39275617)