Non-Coding RNA Search

Ss1.1-rpigcb_12211.5

Sequence:


               
               ATTACTTAATCCATCATGTTCCTAAGTTTGTATAATCTTGCTGTTAAAAACAAAAAGAAT
GTGCACTGAACTTAAAAAGCAAAAATAAGTCCAAACTGATTTATCCTATATTCTGTTTCA
TCACAAAAGTGGAGGAAAGCATTAAACTGGTCAGTTTTGATTGGAAATGCTGTAAAGATG
TGGAATGAAGCCCTGTGAGGCCTTCCTATCTCCAAGTCTATGTATTTTCTGGAGACCAAA
CCAGATACCAGATAATCACAAAGAAAGCTTTTTTAATAAGGCTTAAACCAAGACCTTGTC
TAGATATTTTTAGTTTGTTGCCAAGGTAGCACTGTGAGAAATCTCACTTGAATGTTATGT
AAGGGGTGAGACACAACAGTCTGACTATGAGTGAAAAAAATATCTGGGTCTTTTAGTCAG
TTTGGTGCATTTGCTGCTGCTGTTGCTACTGTTTGCCTCAAACGCTGTGTTTAAACAACG
TTATACTCTTAGCCTACAAGGTGGCTCTTATGTACATAGTTGTTAATACATCCAATTAAT
GATGTCTGACATGCTATTTTTGTAGGGAGAAAATATGTGCTAATGATATTTTCAGTTAAA
ATATCTTTTGGGGAGGATTTGCTGAAAAGTTGCACTTTTGTTACAATGCTTATGCTTGGT
ACAAGCTTATGCTGTCTTAAATTATTAAAAAAAATAAATAAATACTGTCTGCAAGAAACC
AGCTGGTTTAGAAAAGTTTAGTATGTAAAGATAAACTAGAAATTATCTTTATATTCTAGT
ATTTTCAGCACTCCATAAATTCTATTACCTAAAATAAATATTGCAACGCTATTTTGTGAT
TTTAAAATTCTTACTAAGGAATAAAAACTTTAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTACTTAATCCATCATGTTCCTAAGTTTGTATAATCTTGCTGTTAAAAACAAAAAGAAT
GTGCACTGAACTTAAAAAGCAAAAATAAGTCCAAACTGATTTATCCTATATTCTGTTTCA
TCACAAAAGTGGAGGAAAGCATTAAACTGGTCAGTTTTGATTGGAAATGCTGTAAAGATG
TGGAATGAAGCCCTGTGAGGCCTTCCTATCTCCAAGTCTATGTATTTTCTGGAGACCAAA
CCAGATACCAGATAATCACAAAGAAAGCTTTTTTAATAAGGCTTAAACCAAGACCTTGTC
TAGATATTTTTAGTTTGTTGCCAAGGTAGCACTGTGAGAAATCTCACTTGAATGTTATGT
AAGGGGTGAGACACAACAGTCTGACTATGAGTGAAAAAAATATCTGGGTCTTTTAGTCAG
TTTGGTGCATTTGCTGCTGCTGTTGCTACTGTTTGCCTCAAACGCTGTGTTTAAACAACG
TTATACTCTTAGCCTACAAGGTGGCTCTTATGTACATAGTTGTTAATACATCCAATTAAT
GATGTCTGACATGCTATTTTTGTAGGGAGAAAATATGTGCTAATGATATTTTCAGTTAAA
ATATCTTTTGGGGAGGATTTGCTGAAAAGTTGCACTTTTGTTACAATGCTTATGCTTGGT
ACAAGCTTATGCTGTCTTAAATTATTAAAAAAAATAAATAAATACTGTCTGCAAGAAACC
AGCTGGTTTAGAAAAGTTTAGTATGTAAAGATAAACTAGAAATTATCTTTATATTCTAGT
ATTTTCAGCACTCCATAAATTCTATTACCTAAAATAAATATTGCAACGCTATTTTGTGAT
TTTAAAATTCTTACTAAGGAATAAAAACTTTAATAT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               272-431, - strand, RNAz p=0.653424
               

               
               552-671, - strand, RNAz p=0.96089
               

               
               712-831, - strand, RNAz p=0.726584

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-431, - strand, RNAz p=0.653424
               

               
               552-671, - strand, RNAz p=0.96089
               

               
               712-831, - strand, RNAz p=0.726584

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-876, gnl|bosTau2|chr5 (51216517-51217378)
               

               
               1-876, gnl|Hg17|chr12 (26165339-26164464)
               

               
               1-876, gnl|Mm7|chr6 (145952571-145951703)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr5 (51216517-51217378)
               

               
               1-876, gnl|Hg17|chr12 (26165339-26164464)
               

               
               1-876, gnl|Mm7|chr6 (145952571-145951703)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               vin (0.332557)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               sag (0.182715)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               sag (0.182715)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

	272-431, - strand, RNAz p=0.653424
	552-671, - strand, RNAz p=0.96089
	712-831, - strand, RNAz p=0.726584

	1-876, gnl\|bosTau2\|chr5 (51216517-51217378)
	1-876, gnl\|Hg17\|chr12 (26165339-26164464)
	1-876, gnl\|Mm7\|chr6 (145952571-145951703)

	vin (0.332557)
	cbe (0.239234)
	spc (0.226732)
	cty (0.20816)
	sag (0.182715)
	ski (0.146735)
	liv (0.146284)
	cst (0.140036)
	lyg (0.133103)
	ret (0.128733)
	sug (0.127291)