Ss1.1-rpigcb_12234.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAACCCCGGCGGGAGGGGGCAAGATGGCGGCCCAGGTGCTGGCGCTCCTGAGGGAGGTG TCGCGGCTGGAGGCGCCGCTGGAGGAGCTGCGCGCTCTGCAATCGGTGCTGCAGTCGGTG CCACTCAGCGAGCTCCGTGAGCATGCTGCGGAACTGCACCTCGGTCCGCTTTTCTCCCTG CTCAACGAGAACCATCGGGAACAGACTACTTTGTGTGTATCCATCCTGGAGAGATTGCTT CAAGCTTTAGAGCCAGTTCACGTGGCTCGGAACCTCAAGGTTGACCTGCAGAGGGGACTT ACTCATACCAATGATTCTGTAAAAATCCTCACTCTGTCCCAGGTTGGAAGAATTGTTGAC AATTCTGATGCTGTTACTGAGATTCTAAATAATGCTGAATTACTAAAACAAATCGTTTAT TGTATTGGTGGAGAGAATCTGTCTGTAGCTAAAGCGGCCATTAAATCCCTGTCAAGAATA TCACTGACCCAAGCTGGACTGGAGGCTTTGTTCGAAAGTAATCTGCTAGATGATTTGAAA AGTGTGATGAAGACAAATGACATTGTTCGATACAGGGTGTATGAGCTAATTGTGGAGATT TCCTCCGTGTCACCAGAATCTTTAAACTACTGTACCACCAGTGGATTGGTAACACAGCTC CTCCGAGAACTGACCGGTGAGGATGTGCTGGTCAGAGCCACCTGTATAGAGATGGTGACA TCACTGGCATATACTCATCATGGACGACAGTACCTTGCTCAAGAAGGAGTCATTGACCAG ATTTCTAATATAATTGTTGGGGCGGATTCAGACCCTTTCTCTAGCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAACCCCGGCGGGAGGGGGCAAGATGGCGGCCCAGGTGCTGGCGCTCCTGAGGGAGGTG TCGCGGCTGGAGGCGCCGCTGGAGGAGCTGCGCGCTCTGCAATCGGTGCTGCAGTCGGTG CCACTCAGCGAGCTCCGTGAGCATGCTGCGGAACTGCACCTCGGTCCGCTTTTCTCCCTG CTCAACGAGAACCATCGGGAACAGACTACTTTGTGTGTATCCATCCTGGAGAGATTGCTT CAAGCTTTAGAGCCAGTTCACGTGGCTCGGAACCTCAAGGTTGACCTGCAGAGGGGACTT ACTCATACCAATGATTCTGTAAAAATCCTCACTCTGTCCCAGGTTGGAAGAATTGTTGAC AATTCTGATGCTGTTACTGAGATTCTAAATAATGCTGAATTACTAAAACAAATCGTTTAT TGTATTGGTGGAGAGAATCTGTCTGTAGCTAAAGCGGCCATTAAATCCCTGTCAAGAATA TCACTGACCCAAGCTGGACTGGAGGCTTTGTTCGAAAGTAATCTGCTAGATGATTTGAAA AGTGTGATGAAGACAAATGACATTGTTCGATACAGGGTGTATGAGCTAATTGTGGAGATT TCCTCCGTGTCACCAGAATCTTTAAACTACTGTACCACCAGTGGATTGGTAACACAGCTC CTCCGAGAACTGACCGGTGAGGATGTGCTGGTCAGAGCCACCTGTATAGAGATGGTGACA TCACTGGCATATACTCATCATGGACGACAGTACCTTGCTCAAGAAGGAGTCATTGACCAG ATTTCTAATATAATTGTTGGGGCGGATTCAGACCCTTTCTCTAGCTTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 3-198, gnl|bosTau2|chr8 (61475891-61476086) | |
| 3-198, gnl|Hg17|chr9 (120684763-120684568) | |
| 3-198, gnl|Mm7|chr2 (34878243-34878060) | |
| 456-589, gnl|bosTau2|chr8 (61484570-61484703) | |
| 456-589, gnl|canFam2|chr11 (76898260-76898422) | |
| 456-589, gnl|danRer3|chr19 (7822352-7822214) | |
| 456-589, gnl|dasNov1|scaffold_15088 (11012-10851) | |
| 456-589, gnl|echTel1|scaffold_261781 (14058-14220) | |
| 456-589, gnl|galGal2|chr17 (2147640-2147489) | |
| 456-589, gnl|hg17|chr9 (120673146-120673309) | |
| 456-589, gnl|Hg17|chr9 (120673292-120673159) | |
| 456-589, gnl|loxAfr1|scaffold_33923 (3994-3832) | |
| 456-589, gnl|mm7|chr2 (34872821-34872984) | |
| 456-589, gnl|Mm7|chr2 (34872967-34872834) | |
| 456-589, gnl|monDom2|scaffold_38 (13035415-13035576) | |
| 456-589, gnl|oryCun1|scaffold_201334 (174636-174799) | |
| 456-589, gnl|panTro1|chr11 (105409716-105409879) | |
| 456-589, gnl|rheMac2|chr15 (15177647-15177484) | |
| 456-589, gnl|rn3|chr3 (13770220-13770369) | |
| 456-589, gnl|tetNig1|chr4 (4048184-4048325) | |
| 456-589, gnl|xenTro1|scaffold_95 (2180626-2180788) | |
| 692-828, gnl|bosTau2|chr8 (61490078-61490214) | |
| 692-828, gnl|canFam2|chr11 (76893442-76893596) | |
| 692-828, gnl|danRer3|chr19 (7822851-7822701) | |
| 692-828, gnl|dasNov1|scaffold_15088 (15190-15036) | |
| 692-828, gnl|echTel1|scaffold_261781 (9727-9881) | |
| 692-828, gnl|galGal2|chr17 (2148458-2148301) | |
| 692-828, gnl|hg17|chr9 (120668590-120668744) | |
| 692-828, gnl|Hg17|chr9 (120668743-120668607) | |
| 692-828, gnl|loxAfr1|scaffold_33923 (7050-6896) | |
| 692-828, gnl|mm7|chr2 (34867939-34868090) | |
| 692-828, gnl|Mm7|chr2 (34868089-34867953) | |
| 692-828, gnl|monDom2|scaffold_38 (13033719-13033873) | |
| 692-828, gnl|panTro1|chr11 (105405048-105405202) | |
| 692-828, gnl|rheMac2|chr15 (15182981-15182827) | |
| 692-828, gnl|rn3|chr3 (13767633-13767784) | |
| 692-828, gnl|tetNig1|chr4 (4047709-4047863) | |
| 692-828, gnl|xenTro1|scaffold_95 (2178463-2178612) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-198, gnl|bosTau2|chr8 (61475891-61476086) | |
| 3-198, gnl|Hg17|chr9 (120684763-120684568) | |
| 3-198, gnl|Mm7|chr2 (34878243-34878060) | |
| 456-589, gnl|bosTau2|chr8 (61484570-61484703) | |
| 456-589, gnl|canFam2|chr11 (76898260-76898422) | |
| 456-589, gnl|danRer3|chr19 (7822352-7822214) | |
| 456-589, gnl|dasNov1|scaffold_15088 (11012-10851) | |
| 456-589, gnl|echTel1|scaffold_261781 (14058-14220) | |
| 456-589, gnl|galGal2|chr17 (2147640-2147489) | |
| 456-589, gnl|hg17|chr9 (120673146-120673309) | |
| 456-589, gnl|Hg17|chr9 (120673292-120673159) | |
| 456-589, gnl|loxAfr1|scaffold_33923 (3994-3832) | |
| 456-589, gnl|mm7|chr2 (34872821-34872984) | |
| 456-589, gnl|Mm7|chr2 (34872967-34872834) | |
| 456-589, gnl|monDom2|scaffold_38 (13035415-13035576) | |
| 456-589, gnl|oryCun1|scaffold_201334 (174636-174799) | |
| 456-589, gnl|panTro1|chr11 (105409716-105409879) | |
| 456-589, gnl|rheMac2|chr15 (15177647-15177484) | |
| 456-589, gnl|rn3|chr3 (13770220-13770369) | |
| 456-589, gnl|tetNig1|chr4 (4048184-4048325) | |
| 456-589, gnl|xenTro1|scaffold_95 (2180626-2180788) | |
| 692-828, gnl|bosTau2|chr8 (61490078-61490214) | |
| 692-828, gnl|canFam2|chr11 (76893442-76893596) | |
| 692-828, gnl|danRer3|chr19 (7822851-7822701) | |
| 692-828, gnl|dasNov1|scaffold_15088 (15190-15036) | |
| 692-828, gnl|echTel1|scaffold_261781 (9727-9881) | |
| 692-828, gnl|galGal2|chr17 (2148458-2148301) | |
| 692-828, gnl|hg17|chr9 (120668590-120668744) | |
| 692-828, gnl|Hg17|chr9 (120668743-120668607) | |
| 692-828, gnl|loxAfr1|scaffold_33923 (7050-6896) | |
| 692-828, gnl|mm7|chr2 (34867939-34868090) | |
| 692-828, gnl|Mm7|chr2 (34868089-34867953) | |
| 692-828, gnl|monDom2|scaffold_38 (13033719-13033873) | |
| 692-828, gnl|panTro1|chr11 (105405048-105405202) | |
| 692-828, gnl|rheMac2|chr15 (15182981-15182827) | |
| 692-828, gnl|rn3|chr3 (13767633-13767784) | |
| 692-828, gnl|tetNig1|chr4 (4047709-4047863) | |
| 692-828, gnl|xenTro1|scaffold_95 (2178463-2178612) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cty (0.41632) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| clu (0.119646) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.41632) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| clu (0.119646) |