Non-Coding RNA Search

Ss1.1-rpigcb_12259.5

Sequence:


               
               GATTTTGGCTGTTACCCCAGCCAACACCGACCTTGCAAACTCAGATGCATTGAAGCTAGC
TAAAGAAGTTGATCCTCAAGGTCTAAGAACCATTGGCGTCATCACTAAACTGGATCTTAT
GGATGAAGGAACAGATGCTCGGGATGTTCTAGAGAACAAGCTGCTGCCGCTCCGCAGGGG
TTACATTGGGGTGGTAAACAGAAGCCAGAAGGACATAGATGGGAAGAAGGACATAAAGGC
TGCCATGTTGGCAGAAAGGAAATTTTTTCTCTCACACCCGGCTTATAGGCATATTGCTGA
TCGGATGGGGACCCCACACCTGCAGAAGGTCCTTAATCAGCAACTTACCAACCACATCAG
AGACACCCTGCCCAACTTCAGGAACAAACTGCAGGGACAGTTGCTGTCCATAGAACACGA
AGTAGAAGCCTACAAAAACTTCAAGCCAGAAGACCCCACCAGGAAGACCAAAGCATTGCT
TCAGATGGTTCAGCAATTTGCTGTGGACTTTGAGAAGAGAATTGAAGGGTCAGGGGATCA
AGTAGATACACTGGAGCTCTCAGGGGGTGCTAAAATCAATCGTATTTTCCATGAACGCTT
TCCTTTTGAGATAGTAAAGATGGAGTTCAATGAGAAAGAATTACGAAGAGAAATAAGCTA
TGCAATCAAAAACATACATGGTATCAGGACAGGGTTGTTTACTCCAGACATGGCATTTGA
AGCAATAGTCAAAAAACAAATTGTAAAGCTGAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTTGGCTGTTACCCCAGCCAACACCGACCTTGCAAACTCAGATGCATTGAAGCTAGC
TAAAGAAGTTGATCCTCAAGGTCTAAGAACCATTGGCGTCATCACTAAACTGGATCTTAT
GGATGAAGGAACAGATGCTCGGGATGTTCTAGAGAACAAGCTGCTGCCGCTCCGCAGGGG
TTACATTGGGGTGGTAAACAGAAGCCAGAAGGACATAGATGGGAAGAAGGACATAAAGGC
TGCCATGTTGGCAGAAAGGAAATTTTTTCTCTCACACCCGGCTTATAGGCATATTGCTGA
TCGGATGGGGACCCCACACCTGCAGAAGGTCCTTAATCAGCAACTTACCAACCACATCAG
AGACACCCTGCCCAACTTCAGGAACAAACTGCAGGGACAGTTGCTGTCCATAGAACACGA
AGTAGAAGCCTACAAAAACTTCAAGCCAGAAGACCCCACCAGGAAGACCAAAGCATTGCT
TCAGATGGTTCAGCAATTTGCTGTGGACTTTGAGAAGAGAATTGAAGGGTCAGGGGATCA
AGTAGATACACTGGAGCTCTCAGGGGGTGCTAAAATCAATCGTATTTTCCATGAACGCTT
TCCTTTTGAGATAGTAAAGATGGAGTTCAATGAGAAAGAATTACGAAGAGAAATAAGCTA
TGCAATCAAAAACATACATGGTATCAGGACAGGGTTGTTTACTCCAGACATGGCATTTGA
AGCAATAGTCAAAAAACAAATTGTAAAGCTGAAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62088006|dbj|BAD92450.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62088006|dbj|BAD92450.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               179-340, gnl|bosTau2|chr11 (78121364-78121525)
               

               
               179-340, gnl|Hg17|chr9 (128062013-128062174)
               

               
               179-340, gnl|Mm7|chr2 (32345206-32345045)
               


               
               484-619, gnl|bosTau2|chr11 (78122765-78122900)
               

               
               484-619, gnl|Hg17|chr9 (128064294-128064429)
               

               
               484-619, gnl|Mm7|chr2 (32343384-32343249)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-340, gnl|bosTau2|chr11 (78121364-78121525)
               

               
               179-340, gnl|Hg17|chr9 (128062013-128062174)
               

               
               179-340, gnl|Mm7|chr2 (32345206-32345045)
               


               
               484-619, gnl|bosTau2|chr11 (78122765-78122900)
               

               
               484-619, gnl|Hg17|chr9 (128064294-128064429)
               

               
               484-619, gnl|Mm7|chr2 (32343384-32343249)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	179-340, gnl\|bosTau2\|chr11 (78121364-78121525)
	179-340, gnl\|Hg17\|chr9 (128062013-128062174)
	179-340, gnl\|Mm7\|chr2 (32345206-32345045)

	484-619, gnl\|bosTau2\|chr11 (78122765-78122900)
	484-619, gnl\|Hg17\|chr9 (128064294-128064429)
	484-619, gnl\|Mm7\|chr2 (32343384-32343249)