Non-Coding RNA Search

Ss1.1-rpigcb_12261.5

Sequence:


               
               GTTTCTCACCCTAGTGACTAAAGAAAGATTTTACTCTCCCAGCCCAGAAAGGTGATTCTT
TCTTTACCGTTTCTGGGGACTTTATAGTCTTAATTGGGTACCTTATTAACAGGAAATGCT
AAGGTACCTTCTATGTGGAACAATCTGCAATGTCTAAATTGCCTTAAAAGAGCCCATTTC
TTAGCTGCTGAAATCAGTGCTCTTTCACTTCTTCAGAGGAGCAGGGATGGTACCTACCAG
GCAGGTAGGTGAGTTGTAGGTGGTGCATGTTAATTTCCCCTAGGTGTTCCAAGCCCTGTT
TCCGATGGAAAGGTGGTATGTTTGGCTCAGAGATACGTACTAGTGAATGTTGCTTGTTAA
GATCCACTAGGCCCACTTGGATTTAGTACAGCTCTTCCTCCACTCCCACCAGACCCTCTC
ATTTTTCAGGTTTTTAACCAGACTTTACTCTGTTTTGTCCCCTAGCATTTATTTCTTTTG
TTTTGTTTTTTGTTTTGGAGTTTTTTTTATATATATATATATAAGTAAGAAAAATATTTA
GTCTTAATACAGAGGAGCTGCTTGAGTGGTTAGTTGTTATCAGTTTATCTTTTGAACCTT
TGGAGCTAAAAGTGCAGAGTTGAATCTAGAGAAATGCTGATCTCAAACTCTGATAATCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCTCACCCTAGTGACTAAAGAAAGATTTTACTCTCCCAGCCCAGAAAGGTGATTCTT
TCTTTACCGTTTCTGGGGACTTTATAGTCTTAATTGGGTACCTTATTAACAGGAAATGCT
AAGGTACCTTCTATGTGGAACAATCTGCAATGTCTAAATTGCCTTAAAAGAGCCCATTTC
TTAGCTGCTGAAATCAGTGCTCTTTCACTTCTTCAGAGGAGCAGGGATGGTACCTACCAG
GCAGGTAGGTGAGTTGTAGGTGGTGCATGTTAATTTCCCCTAGGTGTTCCAAGCCCTGTT
TCCGATGGAAAGGTGGTATGTTTGGCTCAGAGATACGTACTAGTGAATGTTGCTTGTTAA
GATCCACTAGGCCCACTTGGATTTAGTACAGCTCTTCCTCCACTCCCACCAGACCCTCTC
ATTTTTCAGGTTTTTAACCAGACTTTACTCTGTTTTGTCCCCTAGCATTTATTTCTTTTG
TTTTGTTTTTTGTTTTGGAGTTTTTTTTATATATATATATATAAGTAAGAAAAATATTTA
GTCTTAATACAGAGGAGCTGCTTGAGTGGTTAGTTGTTATCAGTTTATCTTTTGAACCTT
TGGAGCTAAAAGTGCAGAGTTGAATCTAGAGAAATGCTGATCTCAAACTCTGATAATCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-320, + strand, RNAz p=0.989814

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-320, + strand, RNAz p=0.989814

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               127-236, - strand, RNAmicro p=0.991427

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               127-236, - strand, RNAmicro p=0.991427

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               5-320, CJ463022 macaque brain cDNA library QnpA Macaca fascicularis cDNA 
(dbj|CJ463022.1|), blast E-value=0, identity=93.67% 
               

               
               2-320, 335746 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb|BG688213.1|), 
blast E-value=0, identity=94.04% 
               

               
               2-320, 4079439 BARC 9BOV Bos taurus cDNA clone 9BOV14_G16 5', mRNA 
(gb|CK964758.1|), blast E-value=0, identity=94.04% 
               

               
               2-320, 4108550 BARC 9BOV Bos taurus cDNA clone 9BOV35_D13 5', mRNA 
(gb|CK977268.1|), blast E-value=0, identity=94.04% 
               

               
               2-320, 1615050 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|EB726065.1|), 
blast E-value=0, identity=93.73% 
               

               
               2-320, LB02948.CR_H01 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE354076.1|), 
blast E-value=0, identity=94.04%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               5-320, CJ463022 macaque brain cDNA library QnpA Macaca fascicularis cDNA 
(dbj|CJ463022.1|), blast E-value=0, identity=93.67% 
               

               
               2-320, 335746 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb|BG688213.1|), 
blast E-value=0, identity=94.04% 
               

               
               2-320, 4079439 BARC 9BOV Bos taurus cDNA clone 9BOV14_G16 5', mRNA 
(gb|CK964758.1|), blast E-value=0, identity=94.04% 
               

               
               2-320, 4108550 BARC 9BOV Bos taurus cDNA clone 9BOV35_D13 5', mRNA 
(gb|CK977268.1|), blast E-value=0, identity=94.04% 
               

               
               2-320, 1615050 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|EB726065.1|), 
blast E-value=0, identity=93.73% 
               

               
               2-320, LB02948.CR_H01 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE354076.1|), 
blast E-value=0, identity=94.04%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK131563, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK131563, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-660, gnl|bosTau2|chr3 (25420232-25419579)
               

               
               2-660, gnl|Hg17|chr1 (110276549-110277198)
               

               
               2-660, gnl|Mm7|chr3 (107483189-107482596)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-660, gnl|bosTau2|chr3 (25420232-25419579)
               

               
               2-660, gnl|Hg17|chr1 (110276549-110277198)
               

               
               2-660, gnl|Mm7|chr3 (107483189-107482596)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cty (0.20816)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)

	5-320, CJ463022 macaque brain cDNA library QnpA Macaca fascicularis cDNA (dbj\|CJ463022.1\|), blast E-value=0, identity=93.67%
	2-320, 335746 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb\|BG688213.1\|), blast E-value=0, identity=94.04%
	2-320, 4079439 BARC 9BOV Bos taurus cDNA clone 9BOV14_G16 5', mRNA (gb\|CK964758.1\|), blast E-value=0, identity=94.04%
	2-320, 4108550 BARC 9BOV Bos taurus cDNA clone 9BOV35_D13 5', mRNA (gb\|CK977268.1\|), blast E-value=0, identity=94.04%
	2-320, 1615050 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb\|EB726065.1\|), blast E-value=0, identity=93.73%
	2-320, LB02948.CR_H01 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE354076.1\|), blast E-value=0, identity=94.04%

	2-660, gnl\|bosTau2\|chr3 (25420232-25419579)
	2-660, gnl\|Hg17\|chr1 (110276549-110277198)
	2-660, gnl\|Mm7\|chr3 (107483189-107482596)