Ss1.1-rpigcb_12294.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGACCACCTTTGTTTCTCTCCCATGTTCTGTCCCCTGCCCCCTGGCCTCCCCCACTTTCT TTCTTTCTTTTTCTTTTTTCTTTTTTTTTTAAAAAAAAAAACAAAATACAGTGGGGAGAG GCACTGGAGGCGCCCAGGCTAGAACTCTGCGGCCTTAGAGCCATCAGCCCTGGAGGGCCC TCCAGGGAGCGCAACCACCAGACTGAGCCACCACTGGACCGGCCCAGCCCACCCCTCTTT TGCACTCGCAGTTCCGGCATGGACAATGGACCTGGGAGTGGGATCGGGGGTGGGTCCCAA AGAGTTCTCTGAGGCCCTCTACACCTGCAGCCCAACCCCTGGGAGGGTGGAAGCTTGGGG AAGGCCCCTTTGTTTCCAGAGGGGCTTGCAGCCTGGACCCCTACATTGGAACTGGAGGCA GGGGACATGGGAGAGGAGGGCGGGTGCCTATGGGGAAATAGGCACGGCCCCCCAGCCCTC TCCCCTGCCCCCTGCAGGAAGGAGCTGCCTGGACCCACTCACGAGGGGAGGGGGCAGAAG TGTTTTTTATATATGTGTATATATTTTTTTTTTTAAGCTCTGAGCTGTCAACGAGACGTT TCCTACCGAAAAAAAAAAAAAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGACCACCTTTGTTTCTCTCCCATGTTCTGTCCCCTGCCCCCTGGCCTCCCCCACTTTCT TTCTTTCTTTTTCTTTTTTCTTTTTTTTTTAAAAAAAAAAACAAAATACAGTGGGGAGAG GCACTGGAGGCGCCCAGGCTAGAACTCTGCGGCCTTAGAGCCATCAGCCCTGGAGGGCCC TCCAGGGAGCGCAACCACCAGACTGAGCCACCACTGGACCGGCCCAGCCCACCCCTCTTT TGCACTCGCAGTTCCGGCATGGACAATGGACCTGGGAGTGGGATCGGGGGTGGGTCCCAA AGAGTTCTCTGAGGCCCTCTACACCTGCAGCCCAACCCCTGGGAGGGTGGAAGCTTGGGG AAGGCCCCTTTGTTTCCAGAGGGGCTTGCAGCCTGGACCCCTACATTGGAACTGGAGGCA GGGGACATGGGAGAGGAGGGCGGGTGCCTATGGGGAAATAGGCACGGCCCCCCAGCCCTC TCCCCTGCCCCCTGCAGGAAGGAGCTGCCTGGACCCACTCACGAGGGGAGGGGGCAGAAG TGTTTTTTATATATGTGTATATATTTTTTTTTTTAAGCTCTGAGCTGTCAACGAGACGTT TCCTACCGAAAAAAAAAAAAAAAG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 32-186, - strand, RNAz p=0.999963 | |
| 380-605, - strand, RNAz p=0.999985 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 32-186, - strand, RNAz p=0.999963 | |
| 380-605, - strand, RNAz p=0.999985 |
| Predicted microRNA(s): 4 entry(ies) | More info |
| Predicted microRNA(s): 4 entry(ies) | Help | Less info |
| 431-559, - strand, RNAmicro p=1 | |
| 33-153, - strand, RNAmicro p=0.999999 | |
| 432-527, + strand, RNAmicro p=0.999988 | |
| 33-212, + strand, RNAmicro p=0.994892 |
| Predicted microRNA(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 431-559, - strand, RNAmicro p=1 | |
| 33-153, - strand, RNAmicro p=0.999999 | |
| 432-527, + strand, RNAmicro p=0.999988 | |
| 33-212, + strand, RNAmicro p=0.994892 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 119-186, AJ924982 Theileria annulata merozoite Theileria annulata cDNA clone (emb|AJ924982.1|), blast E-value=4e-17, identity=92.65% | |
| 119-186, AM035539 KN-252-spleen, Bos taurus Bos taurus cDNA clone (emb|AM035539.1|), blast E-value=4e-17, identity=92.65% | |
| 119-186, 536647 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM483359.1|), blast E-value=4e-17, identity=92.65% | |
| 119-186, BE04013B1E06 BE04 Normalized and Subtracted bovine embryonic and (gb|CN437695.1|), blast E-value=4e-17, identity=92.65% | |
| 119-186, BovGen_13657 normal cattle brain Bos taurus cDNA clone (gb|CO885332.1|), blast E-value=4e-17, identity=92.65% | |
| 119-186, sh2P0011A12_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, (gb|DY493871.1|), blast E-value=4e-17, identity=92.65% | |
| 380-563, AJ924982 Theileria annulata merozoite Theileria annulata cDNA clone (emb|AJ924982.1|), blast E-value=0.00000000000002, identity=89.19% | |
| 380-563, AM036270 KN-252-spleen, Bos taurus Bos taurus cDNA clone (emb|AM036270.1|), blast E-value=0.00000000000002, identity=89.19% | |
| 380-463, 27710 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW346311.1|), blast E-value=3e-31, identity=96.43% | |
| 380-563, 34943 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|AW353149.1|), blast E-value=0.000000000001, identity=87.84% | |
| 380-605, 488851 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM030260.1|), blast E-value=7e-20, identity=84.48% | |
| 380-463, 001016BEMN049457HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY153045.1|), blast E-value=8e-29, identity=95.24% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 119-186, AJ924982 Theileria annulata merozoite Theileria annulata cDNA clone (emb|AJ924982.1|), blast E-value=4e-17, identity=92.65% | |
| 119-186, AM035539 KN-252-spleen, Bos taurus Bos taurus cDNA clone (emb|AM035539.1|), blast E-value=4e-17, identity=92.65% | |
| 119-186, 536647 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM483359.1|), blast E-value=4e-17, identity=92.65% | |
| 119-186, BE04013B1E06 BE04 Normalized and Subtracted bovine embryonic and (gb|CN437695.1|), blast E-value=4e-17, identity=92.65% | |
| 119-186, BovGen_13657 normal cattle brain Bos taurus cDNA clone (gb|CO885332.1|), blast E-value=4e-17, identity=92.65% | |
| 119-186, sh2P0011A12_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, (gb|DY493871.1|), blast E-value=4e-17, identity=92.65% | |
| 380-563, AJ924982 Theileria annulata merozoite Theileria annulata cDNA clone (emb|AJ924982.1|), blast E-value=0.00000000000002, identity=89.19% | |
| 380-563, AM036270 KN-252-spleen, Bos taurus Bos taurus cDNA clone (emb|AM036270.1|), blast E-value=0.00000000000002, identity=89.19% | |
| 380-463, 27710 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW346311.1|), blast E-value=3e-31, identity=96.43% | |
| 380-563, 34943 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|AW353149.1|), blast E-value=0.000000000001, identity=87.84% | |
| 380-605, 488851 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM030260.1|), blast E-value=7e-20, identity=84.48% | |
| 380-463, 001016BEMN049457HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY153045.1|), blast E-value=8e-29, identity=95.24% |
| Aligned organism(s): 3 entry(ies) | More info |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
| 1-609, gnl|bosTau2|chr19 (38089310-38089911) | |
| 1-609, gnl|Hg17|chr17 (39640080-39639487) | |
| 1-609, gnl|Mm7|chr11 (102415603-102415030) |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-609, gnl|bosTau2|chr19 (38089310-38089911) | |
| 1-609, gnl|Hg17|chr17 (39640080-39639487) | |
| 1-609, gnl|Mm7|chr11 (102415603-102415030) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fcc (0.197785) | |
| fbs (0.175346) | |
| pty (0.142714) | |
| eru (0.120048) | |
| clu (0.119646) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| fbs (0.175346) | |
| pty (0.142714) | |
| eru (0.120048) | |
| clu (0.119646) | |
| cty (0.10408) |