Non-Coding RNA Search

Ss1.1-rpigcb_12395.5

Sequence:


               
               GACAGCTGATGGCAGAAGAGGGGCCTTGGGGCCTCATGAAGGGACTCTCTGCCAGAATCA
TCTCAGCCACGCCCTCCACCATTGTTATTGTGGTGGGCTACGAGAGCCTCAAGAAACTCA
GCCTCCGACCTGAGCTGGTGGACTCAAGACACTGGTAACCAGTGGTGGGGAGAGAAGCCT
GCTGTTTCCCACACTATGCGCTGGGGGCAGAGAGGAGACCATAGCACCCTCTCCAAGTGC
CCCCACCACTACCTAACTCTGCCCTGGGCCAGGTGGCCTCTCTGGGACAGGGACAGAGAC
TTCGAACTGCTCTTGCTGAAGAGGCTCCACACCTGGATCCCCTGCCCCCATTATTTTTAA
TTTTCTTGCCAAACTGGGCTCCCTCACTAGTCCAGGTACTCAGTCCTGCCCTAAGGAAAC
CCACCCTCCCTGCAATCCCACTCCATCCATCCTCTGCTAACCCTTCTCTCCCTTCTCCCT
CCATCTGCACCCCTGAGATCCTGAGAAGAGCTGTACACAGAGCTTGCTCACTGCTACTGG
TTCTTCTTCTTGGGCTTTCAGCCCAGATTCCAAGCAGCTGCTAGCAGCCCTTTCTTGCTT
CATCCCTTAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGCTGATGGCAGAAGAGGGGCCTTGGGGCCTCATGAAGGGACTCTCTGCCAGAATCA
TCTCAGCCACGCCCTCCACCATTGTTATTGTGGTGGGCTACGAGAGCCTCAAGAAACTCA
GCCTCCGACCTGAGCTGGTGGACTCAAGACACTGGTAACCAGTGGTGGGGAGAGAAGCCT
GCTGTTTCCCACACTATGCGCTGGGGGCAGAGAGGAGACCATAGCACCCTCTCCAAGTGC
CCCCACCACTACCTAACTCTGCCCTGGGCCAGGTGGCCTCTCTGGGACAGGGACAGAGAC
TTCGAACTGCTCTTGCTGAAGAGGCTCCACACCTGGATCCCCTGCCCCCATTATTTTTAA
TTTTCTTGCCAAACTGGGCTCCCTCACTAGTCCAGGTACTCAGTCCTGCCCTAAGGAAAC
CCACCCTCCCTGCAATCCCACTCCATCCATCCTCTGCTAACCCTTCTCTCCCTTCTCCCT
CCATCTGCACCCCTGAGATCCTGAGAAGAGCTGTACACAGAGCTTGCTCACTGCTACTGG
TTCTTCTTCTTGGGCTTTCAGCCCAGATTCCAAGCAGCTGCTAGCAGCCCTTTCTTGCTT
CATCCCTTAGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47177823|emb|CAG14132.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47177823|emb|CAG14132.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-275, - strand, RNAz p=0.985858
               

               
               480-592, - strand, RNAz p=0.936352

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-275, - strand, RNAz p=0.985858
               

               
               480-592, - strand, RNAz p=0.936352

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-592, gnl|bosTau2|chr3 (10426011-10425413)
               

               
               1-592, gnl|Hg17|chr1 (152993138-152993720)
               

               
               1-592, gnl|Mm7|chr3 (88526664-88526120)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-592, gnl|bosTau2|chr3 (10426011-10425413)
               

               
               1-592, gnl|Hg17|chr1 (152993138-152993720)
               

               
               1-592, gnl|Mm7|chr3 (88526664-88526120)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)
               

               
               cty (0.10408)

	1-275, - strand, RNAz p=0.985858
	480-592, - strand, RNAz p=0.936352

	1-592, gnl\|bosTau2\|chr3 (10426011-10425413)
	1-592, gnl\|Hg17\|chr1 (152993138-152993720)
	1-592, gnl\|Mm7\|chr3 (88526664-88526120)