Non-Coding RNA Search

Ss1.1-rpigcb_12460.5

Sequence:


               
               TACTGTAAAGGGACACATGGTATCATGTCACCACTGGCCAAGAAGAAGCTCCTGGCCCAG
GTGAGCAAGGCAGAGGCCTTGCAATGCCAGGAGGGGGGCTGTCGCCATGGGGCAAGTGGG
GAGCCCCAGGTGCCCTCAACTGTTCAGCCCCTGGAGAGCCCCCAGAGCCCAGGAGGGCTG
GCTGAGAACTCCAGGCACCAGCTGACACCTCCGGAAGGGGTGCAGGGCCCTGGTGGCAGT
CTTAGGGAGGAGGCTCAGGTGGGGCCTCGCCCCTCTGCCCCCACCTTCACCGGCTGCCTC
CACACCTACTCTTCTGAGGTGCTGAAGCCCATCAGCCAGCACCCCCGGGACTTCCTCCCC
AGTCTTAAAGATGCGGTGTTACTGGGGCCCCCTGGCAAAGAGGAAGGGCTGCCGACCAAG
GAGCCCCAGCTGGTATGGGGTGGGGATGCCAACCGTCCCTCTGCATTCCACAAGGGCGGC
TCCAGGAAGGGCAGCCTCTACCCCAAACCCAAAGCCTGCTGGGTGTCCCCCATGACCAAG
GTCCCTGCTGAGAGCCCTGTGCCCACCTTCCCAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTGTAAAGGGACACATGGTATCATGTCACCACTGGCCAAGAAGAAGCTCCTGGCCCAG
GTGAGCAAGGCAGAGGCCTTGCAATGCCAGGAGGGGGGCTGTCGCCATGGGGCAAGTGGG
GAGCCCCAGGTGCCCTCAACTGTTCAGCCCCTGGAGAGCCCCCAGAGCCCAGGAGGGCTG
GCTGAGAACTCCAGGCACCAGCTGACACCTCCGGAAGGGGTGCAGGGCCCTGGTGGCAGT
CTTAGGGAGGAGGCTCAGGTGGGGCCTCGCCCCTCTGCCCCCACCTTCACCGGCTGCCTC
CACACCTACTCTTCTGAGGTGCTGAAGCCCATCAGCCAGCACCCCCGGGACTTCCTCCCC
AGTCTTAAAGATGCGGTGTTACTGGGGCCCCCTGGCAAAGAGGAAGGGCTGCCGACCAAG
GAGCCCCAGCTGGTATGGGGTGGGGATGCCAACCGTCCCTCTGCATTCCACAAGGGCGGC
TCCAGGAAGGGCAGCCTCTACCCCAAACCCAAAGCCTGCTGGGTGTCCCCCATGACCAAG
GTCCCTGCTGAGAGCCCTGTGCCCACCTTCCCAAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-518, - strand, RNAz p=0.999823

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-518, - strand, RNAz p=0.999823

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               124-362, - strand, RNAmicro p=0.999288
               

               
               411-549, - strand, RNAmicro p=0.995456
               

               
               201-324, + strand, RNAmicro p=0.960787

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               124-362, - strand, RNAmicro p=0.999288
               

               
               411-549, - strand, RNAmicro p=0.995456
               

               
               201-324, + strand, RNAmicro p=0.960787

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-564, gnl|bosTau2|chr11 (1547352-1546788)
               

               
               1-564, gnl|Hg17|chr2 (96638878-96639432)
               

               
               1-564, gnl|Mm7|chr1 (36560541-36561089)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr11 (1547352-1546788)
               

               
               1-564, gnl|Hg17|chr2 (96638878-96639432)
               

               
               1-564, gnl|Mm7|chr1 (36560541-36561089)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	124-362, - strand, RNAmicro p=0.999288
	411-549, - strand, RNAmicro p=0.995456
	201-324, + strand, RNAmicro p=0.960787

	1-564, gnl\|bosTau2\|chr11 (1547352-1546788)
	1-564, gnl\|Hg17\|chr2 (96638878-96639432)
	1-564, gnl\|Mm7\|chr1 (36560541-36561089)