Non-Coding RNA Search

Ss1.1-rpigcb_12522.5

Sequence:


               
               AATGTTACGATGGCCTGGCGACAGAGTGTAATGAAGACAGTTTGAGACCCGGATGACGAG
AAATGGACTTCACTTGGCGAGATGCACACATCGCGAGTATTTACGGAGTGGGCAGTAAAG
GAGAAGGACCTGGTGTGTTTATTCTGATCATGGTACATTTCTCACTGAATTAAGCCATCA
GGGAAAACAAAAAACAAAAAAGAACACCTCCAGCTTTTCTTTTTCTGTATATACTCATGT
CCTCAAATTCCACCATTGCTCACTGACAGGGGACATGTATGCAAACCTCATATTTCTCCT
TCATTAATGATGACTTCAGATTCAACCCTTTGGTGCTAGGAGCTGACATTTTCCAAAGCA
GCCTGTGAAGTCCAGGGGGCAGGGGGGCTCCCGACTCCACAGGGCACTCGCGGAGATGTG
TTTTAGGTGAACGTCGGACAGCTCCCACGTGGAAGGCTCCAGCATGATGAGTGTCGTGAC
CGCATTGTATGAGAGAGCAAGTGACCTTCCCGTAGGATGAGTCATATTCATACGCCGATG
TCTTAGCCTCTTGACGCTGGAAGTGTGGATTTCTAGATCCGAAACCACTGCTGGCGGTGG
GTGGACCGCTGGGACCGACAGGGGGGTTCAAGGGCATTTTACTAAGGCAGCTAAGACATA
TGCAGACATAGATGTTATTCTGATTTTTCATATTTCTACCTGAGTGAAGTTCATCCTTAG
CATTGAGTAGGAAGTTCCAGGGAATGGTAGTTCATTCCTAACTTACACATAGAGCTCAAC
ATTCTTTTTCCTCTTGGAATTCTGTTGAATGTTTCACGTTGACCAGGAAGTAGACTGGAA
GGTATGTCCTGTTAAGTTGTCTTGCATCCATTGGTGAGAAAGACACAGGCGAGAGGGAGA
GAGGAGAGCTGAGACGGGCTGGTGTTCAGAGCATTCACTTCTGCAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGTTACGATGGCCTGGCGACAGAGTGTAATGAAGACAGTTTGAGACCCGGATGACGAG
AAATGGACTTCACTTGGCGAGATGCACACATCGCGAGTATTTACGGAGTGGGCAGTAAAG
GAGAAGGACCTGGTGTGTTTATTCTGATCATGGTACATTTCTCACTGAATTAAGCCATCA
GGGAAAACAAAAAACAAAAAAGAACACCTCCAGCTTTTCTTTTTCTGTATATACTCATGT
CCTCAAATTCCACCATTGCTCACTGACAGGGGACATGTATGCAAACCTCATATTTCTCCT
TCATTAATGATGACTTCAGATTCAACCCTTTGGTGCTAGGAGCTGACATTTTCCAAAGCA
GCCTGTGAAGTCCAGGGGGCAGGGGGGCTCCCGACTCCACAGGGCACTCGCGGAGATGTG
TTTTAGGTGAACGTCGGACAGCTCCCACGTGGAAGGCTCCAGCATGATGAGTGTCGTGAC
CGCATTGTATGAGAGAGCAAGTGACCTTCCCGTAGGATGAGTCATATTCATACGCCGATG
TCTTAGCCTCTTGACGCTGGAAGTGTGGATTTCTAGATCCGAAACCACTGCTGGCGGTGG
GTGGACCGCTGGGACCGACAGGGGGGTTCAAGGGCATTTTACTAAGGCAGCTAAGACATA
TGCAGACATAGATGTTATTCTGATTTTTCATATTTCTACCTGAGTGAAGTTCATCCTTAG
CATTGAGTAGGAAGTTCCAGGGAATGGTAGTTCATTCCTAACTTACACATAGAGCTCAAC
ATTCTTTTTCCTCTTGGAATTCTGTTGAATGTTTCACGTTGACCAGGAAGTAGACTGGAA
GGTATGTCCTGTTAAGTTGTCTTGCATCCATTGGTGAGAAAGACACAGGCGAGAGGGAGA
GAGGAGAGCTGAGACGGGCTGGTGTTCAGAGCATTCACTTCTGCAGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               196-313, + strand, RNAz p=0.804745

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-313, + strand, RNAz p=0.804745

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_005465, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005465, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-386, gnl|bosTau2|chr14 (41426964-41426580)
               

               
               1-386, gnl|Hg17|chr1 (239993260-239992870)
               

               
               1-386, gnl|Mm7|chr1 (176990382-176990012)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-386, gnl|bosTau2|chr14 (41426964-41426580)
               

               
               1-386, gnl|Hg17|chr1 (239993260-239992870)
               

               
               1-386, gnl|Mm7|chr1 (176990382-176990012)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-386, gnl\|bosTau2\|chr14 (41426964-41426580)
	1-386, gnl\|Hg17\|chr1 (239993260-239992870)
	1-386, gnl\|Mm7\|chr1 (176990382-176990012)