Ss1.1-rpigcb_12543.5
|
ACTTAAAACCAGAGAATATTTTGCTAGATTCACAGGGACACATTGTCCTTACCGACTTTG
GACTCTGCAAGGAGAACATTGAACACAACGGCACGACATCCACCTTCTGCGGCACACCTG
AGTATCTTGCACCTGAGGTCCTTCACAAGCAGCCTTATGACAGGACTGTGGACTGGTGGT
GCCTGGGGGCCGTCTTATATGAGATGCTGTATGGTCTGCCTCCATTTTACAGCCGAAACA
CAGCTGAGATGTACGACAACATTCTGAACAAGCCCCTCCAGTTGAAACCAAATATTACGA
ATTCTGCAAGACACGTCCTGGAGGGCCTTCTGCAGAAGGACAGGACGAAGAGGCTGGGTG
CCAAGGATGACTTTATGGAGATTAAGAATCATGTCTTCTTCTCCGTAATTAACTGGGATG
ATCTCATTAATAAGAAGATTACTCCCCCTTTTAACCCAAATGTGAGCGGACCCAGCGACC
TGCGGCACTTTGACCCCGAGTTCACCGAAGAGCCGGTCCCCAATTCCATTGGCCGGTCCC
CCGACAGCATCCTCCTCACCGCCAGCGTCAAGGAAGCAGCCGAGGCCTTCCTGGGCTTCT
CCTACGCCCCTCCCGTGGACTCCTTCCTCTGAACAGTCCAAGGGTGGTGGGTGGGTTGCA
AAGGACCGCATGTGGGTTCAGGAAACGTTTCAGTTAGCCTTTTGGCAGAGCCGCCAGCTG
ACAGGACCTCCTAAAAGAGAATTTGCACATCCCTGGAAGCTTGCGCACCTTGGCAGTCAT
TATTGCACAGTTTGCTGGAAGCTTTTTCTCGAAGAGCACATCCTCCTCAGTGAGCTGGCG
AGGTTTGCATTTTTATCCTGCCTTCCACTGTGGTGCTAACTCTGGCAGGCGCGTTAGAGG
GAGGGCTGCCCAAGACAGAGGCCAGGGGTCGCGCTCGAAGGAGGACGCTGTTCTGAGAAG
GAGCTTCGGAAGGTCTGTCCCGGGCCACGAATCTTCAACGAAATGTGCCTTTTCTGATGA
GATCGTCTTCGCTCCAAAGCTTTTTCCTATGGCCGCGTGTGTCCGTTCCCTGTTGCTCCT
CGTGGACTTCCTGTGTGATCAGCCCTGTGTGCGTGTGGAGTGCTTGCTGAAGGACTCAGC
TCTGAGCATCAATGTGACACTTGCAGGACACTACAACGTGGGACATTGTTTGTTTCTTCC
ATATTTGGAAGATAAATTTATGTGGAGACTTTTTTTTTTTTTGTAAGATATAGTTAATAA
CTAAAATTTATGGTAAATGGTCTTGCAACGACTTGTATCCAGATGCTTAAAGAAAGCATT
GCTGCTACAAATATTTCTATTTTTAGAAAGGGTTTTTATGGACCAATGCCCCAGTTGTCA
GTCAGAGCCTGGTGTTTTCATTGTTTAAAATGTCACCTGTAAAACGGGCATTATTTATGT
TTTTGTTTTTGTTTCTTTTTGGCATTCCTGATAATTGTATGTATTGTATAAAGACAGTCT
GTACATTGGGTTATAACACTAGTATATTTAAACTTACAGGCTTATTTGTAATGTAAACCA
CCATTTTAATGTACTGTAATTAACATGGTTATAATATGTACAATTCCTCTCCCCTCCCAA
CACACACTTTTTTGTGTGTGTGATAAACCAACTTCGGTTTGCAATAAAACCTTGAAAAAT
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACTTAAAACCAGAGAATATTTTGCTAGATTCACAGGGACACATTGTCCTTACCGACTTTG
GACTCTGCAAGGAGAACATTGAACACAACGGCACGACATCCACCTTCTGCGGCACACCTG
AGTATCTTGCACCTGAGGTCCTTCACAAGCAGCCTTATGACAGGACTGTGGACTGGTGGT
GCCTGGGGGCCGTCTTATATGAGATGCTGTATGGTCTGCCTCCATTTTACAGCCGAAACA
CAGCTGAGATGTACGACAACATTCTGAACAAGCCCCTCCAGTTGAAACCAAATATTACGA
ATTCTGCAAGACACGTCCTGGAGGGCCTTCTGCAGAAGGACAGGACGAAGAGGCTGGGTG
CCAAGGATGACTTTATGGAGATTAAGAATCATGTCTTCTTCTCCGTAATTAACTGGGATG
ATCTCATTAATAAGAAGATTACTCCCCCTTTTAACCCAAATGTGAGCGGACCCAGCGACC
TGCGGCACTTTGACCCCGAGTTCACCGAAGAGCCGGTCCCCAATTCCATTGGCCGGTCCC
CCGACAGCATCCTCCTCACCGCCAGCGTCAAGGAAGCAGCCGAGGCCTTCCTGGGCTTCT
CCTACGCCCCTCCCGTGGACTCCTTCCTCTGAACAGTCCAAGGGTGGTGGGTGGGTTGCA
AAGGACCGCATGTGGGTTCAGGAAACGTTTCAGTTAGCCTTTTGGCAGAGCCGCCAGCTG
ACAGGACCTCCTAAAAGAGAATTTGCACATCCCTGGAAGCTTGCGCACCTTGGCAGTCAT
TATTGCACAGTTTGCTGGAAGCTTTTTCTCGAAGAGCACATCCTCCTCAGTGAGCTGGCG
AGGTTTGCATTTTTATCCTGCCTTCCACTGTGGTGCTAACTCTGGCAGGCGCGTTAGAGG
GAGGGCTGCCCAAGACAGAGGCCAGGGGTCGCGCTCGAAGGAGGACGCTGTTCTGAGAAG
GAGCTTCGGAAGGTCTGTCCCGGGCCACGAATCTTCAACGAAATGTGCCTTTTCTGATGA
GATCGTCTTCGCTCCAAAGCTTTTTCCTATGGCCGCGTGTGTCCGTTCCCTGTTGCTCCT
CGTGGACTTCCTGTGTGATCAGCCCTGTGTGCGTGTGGAGTGCTTGCTGAAGGACTCAGC
TCTGAGCATCAATGTGACACTTGCAGGACACTACAACGTGGGACATTGTTTGTTTCTTCC
ATATTTGGAAGATAAATTTATGTGGAGACTTTTTTTTTTTTTGTAAGATATAGTTAATAA
CTAAAATTTATGGTAAATGGTCTTGCAACGACTTGTATCCAGATGCTTAAAGAAAGCATT
GCTGCTACAAATATTTCTATTTTTAGAAAGGGTTTTTATGGACCAATGCCCCAGTTGTCA
GTCAGAGCCTGGTGTTTTCATTGTTTAAAATGTCACCTGTAAAACGGGCATTATTTATGT
TTTTGTTTTTGTTTCTTTTTGGCATTCCTGATAATTGTATGTATTGTATAAAGACAGTCT
GTACATTGGGTTATAACACTAGTATATTTAAACTTACAGGCTTATTTGTAATGTAAACCA
CCATTTTAATGTACTGTAATTAACATGGTTATAATATGTACAATTCCTCTCCCCTCCCAA
CACACACTTTTTTGTGTGTGTGATAAACCAACTTCGGTTTGCAATAAAACCTTGAAAAAT
AAAAAAAAAAAA
|
|
gi|12805493|gb|AAH02222.1| |
Protein identifier
|
gi|12805493|gb|AAH02222.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-122, gnl|bosTau2|chr9 (40490985-40490864) |
|
1-122, gnl|Hg17|chr6 (134535145-134535024) |
|
1-122, gnl|Mm7|chr10 (21729822-21729943) |
| |
|
215-377, gnl|bosTau2|chr9 (40489873-40489711) |
|
215-377, gnl|Hg17|chr6 (134534013-134533851) |
|
215-377, gnl|Mm7|chr10 (21730735-21730897) |
| |
|
464-645, gnl|bosTau2|chr9 (40489126-40488945) |
|
464-645, gnl|Hg17|chr6 (134533267-134533085) |
|
464-645, gnl|Mm7|chr10 (21731500-21731680) |
| |
|
688-1681, gnl|bosTau2|chr9 (40488929-40487937) |
|
688-1681, gnl|Hg17|chr6 (134533069-134532087) |
|
688-1681, gnl|Mm7|chr10 (21731717-21732734) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-122, gnl|bosTau2|chr9 (40490985-40490864) |
|
1-122, gnl|Hg17|chr6 (134535145-134535024) |
|
1-122, gnl|Mm7|chr10 (21729822-21729943) |
| |
|
215-377, gnl|bosTau2|chr9 (40489873-40489711) |
|
215-377, gnl|Hg17|chr6 (134534013-134533851) |
|
215-377, gnl|Mm7|chr10 (21730735-21730897) |
| |
|
464-645, gnl|bosTau2|chr9 (40489126-40488945) |
|
464-645, gnl|Hg17|chr6 (134533267-134533085) |
|
464-645, gnl|Mm7|chr10 (21731500-21731680) |
| |
|
688-1681, gnl|bosTau2|chr9 (40488929-40487937) |
|
688-1681, gnl|Hg17|chr6 (134533069-134532087) |
|
688-1681, gnl|Mm7|chr10 (21731717-21732734) |
|
cbl (1.26277) |
|
sin (1.04969) |
|
cki (0.991408) |
|
duo (0.864006) |
|
nje (0.66368) |
|
cov (0.660764) |
|
jej (0.593531) |
|
sug (0.509165) |
|
cag (0.453583) |
|
amn (0.417711) |
|
tra (0.369276) |
|
ill (0.351185) |
|
fbs (0.350693) |
|
rec (0.346141) |
|
nco (0.323468) |
|
spl (0.286369) |
|
hyp (0.285673) |
|
ste (0.270416) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
bla (0.248694) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
mgm (0.180343) |
|
fty (0.17584) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
cje (0.165235) |
|
isp (0.150376) |
|
fat (0.147427) |
|
ski (0.146735) |
|
cst (0.140036) |
|
nca (0.136874) |
|
pla (0.133672) |
|
ova (0.129132) |
|
eep (0.122564) |
|
cly (0.120642) |
|
spc (0.113366) |
|
cty (0.10408) |
|
ldo (0.0970026) |
|
cbl (1.26277) |
|
sin (1.04969) |
|
cki (0.991408) |
|
duo (0.864006) |
|
nje (0.66368) |
|
cov (0.660764) |
|
jej (0.593531) |
|
sug (0.509165) |
|
cag (0.453583) |
|
amn (0.417711) |
|
tra (0.369276) |
|
ill (0.351185) |
|
fbs (0.350693) |
|
rec (0.346141) |
|
nco (0.323468) |
|
spl (0.286369) |
|
hyp (0.285673) |
|
ste (0.270416) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
bla (0.248694) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
mgm (0.180343) |
|
fty (0.17584) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
cje (0.165235) |
|
isp (0.150376) |
|
fat (0.147427) |
|
ski (0.146735) |
|
cst (0.140036) |
|
nca (0.136874) |
|
pla (0.133672) |
|
ova (0.129132) |
|
eep (0.122564) |
|
cly (0.120642) |
|
spc (0.113366) |
|
cty (0.10408) |
|
ldo (0.0970026) |
