Ss1.1-rpigcb_12544.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGCAGGAGCTGCAGCACCGGCAGCAGCAGGAGGCCCCGGCGGGCGGCGGCTGCAGCCC GCAGTCCGGGGACTGGGGGGACCAGTACTCGGCCGAGTGCGGCGAGTCATCTTTTTTGAA CTTCCATGACTCCGACTGCGAACCCAAAGGATCACCACCCTGCGACTCACTGCTTTCCTT CAACACTGAGAAGATTCTGAGCCAGGCCAAGTCTATTGCCGAACAGAAGAGATTCCCATT TGCAACTGATAATGACAGCACAAATGAAGAATTAGCTATTGCATATGTATTGATCGGCAG TGGTCTCTATGATGAAGCAATAAGACATTTTTCAACAATGCTTCAGATTCTGTCCCCTCT GGGACGAATTAATGAAGCAGTGAATGATCTCACTAAAGCTATTCAGCTTCAGCCCTCAGC ACGGCTGTACAGACACCGGGGGACCCTGTACTTCATATCAGAGGACTATGCCACAGCCCA TGAAGACTTTCAGCAGTCCTTAGAACTGAACAAAAACCAGCCCATAGCTATGCTATACAA AGGTTTAACTTTCTTTCACAGAGGACTTTTGAAGAATGAGGTAGAGAGCTGTGCAGTGAT TAGACAGGAACCCCGAAACCAAAGACTCTTAAAAGCTGAAGAGAAATCAGACTTTGAAGA ACTGTGGCGTCCAAGCATGCTGAAGCTATTGAATCCTTCAAAGAAGCTTTGAAGCAAAAA GTTGACTTTATTGATGCATATAAAAGTCTTGGGCAGGCCTATAGAGAACTGGGCAATTTT GAAGCAGCCACTGAGAGCTTTCAAAAGGCTCTGTTGCTCAACCAAAATCATGTGCAGACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGCAGGAGCTGCAGCACCGGCAGCAGCAGGAGGCCCCGGCGGGCGGCGGCTGCAGCCC GCAGTCCGGGGACTGGGGGGACCAGTACTCGGCCGAGTGCGGCGAGTCATCTTTTTTGAA CTTCCATGACTCCGACTGCGAACCCAAAGGATCACCACCCTGCGACTCACTGCTTTCCTT CAACACTGAGAAGATTCTGAGCCAGGCCAAGTCTATTGCCGAACAGAAGAGATTCCCATT TGCAACTGATAATGACAGCACAAATGAAGAATTAGCTATTGCATATGTATTGATCGGCAG TGGTCTCTATGATGAAGCAATAAGACATTTTTCAACAATGCTTCAGATTCTGTCCCCTCT GGGACGAATTAATGAAGCAGTGAATGATCTCACTAAAGCTATTCAGCTTCAGCCCTCAGC ACGGCTGTACAGACACCGGGGGACCCTGTACTTCATATCAGAGGACTATGCCACAGCCCA TGAAGACTTTCAGCAGTCCTTAGAACTGAACAAAAACCAGCCCATAGCTATGCTATACAA AGGTTTAACTTTCTTTCACAGAGGACTTTTGAAGAATGAGGTAGAGAGCTGTGCAGTGAT TAGACAGGAACCCCGAAACCAAAGACTCTTAAAAGCTGAAGAGAAATCAGACTTTGAAGA ACTGTGGCGTCCAAGCATGCTGAAGCTATTGAATCCTTCAAAGAAGCTTTGAAGCAAAAA GTTGACTTTATTGATGCATATAAAAGTCTTGGGCAGGCCTATAGAGAACTGGGCAATTTT GAAGCAGCCACTGAGAGCTTTCAAAAGGCTCTGTTGCTCAACCAAAATCATGTGCAGACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 345-464, - strand, RNAz p=0.638737 | |
| 566-682, + strand, RNAz p=0.732826 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 345-464, - strand, RNAz p=0.638737 | |
| 566-682, + strand, RNAz p=0.732826 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-104, gnl|bosTau2|chr28 (1443242-1443139) | |
| 1-104, gnl|canFam2|chr4 (11424826-11424750) | |
| 1-104, gnl|dasNov1|scaffold_38714 (46136-46212) | |
| 1-104, gnl|echTel1|scaffold_263879 (484-405) | |
| 1-104, gnl|galGal2|chr3 (36746335-36746391) | |
| 1-104, gnl|hg17|chr1 (227421036-227421115) | |
| 1-104, gnl|Hg17|chr1 (227421147-227421041) | |
| 1-104, gnl|mm7|chr8 (123308879-123308946) | |
| 1-104, gnl|Mm7|chr8 (123308978-123308884) | |
| 1-104, gnl|monDom2|scaffold_13 (59543168-59543250) | |
| 1-104, gnl|oryCun1|scaffold_214021 (11135-11056) | |
| 1-104, gnl|panTro1|chr1 (211271478-211271557) | |
| 1-104, gnl|rheMac2|chr1 (225979000-225978921) | |
| 1-104, gnl|rn3|chr19 (54909197-54909264) | |
| 345-464, gnl|bosTau2|chr28 (1404279-1404160) | |
| 345-464, gnl|canFam2|chr4 (11463272-11463131) | |
| 345-464, gnl|danRer3|chr17 (9573792-9573650) | |
| 345-464, gnl|echTel1|scaffold_254612 (4024-3882) | |
| 345-464, gnl|fr1|chrUn (312212501-312212621) | |
| 345-464, gnl|galGal2|chr3 (36735922-36736069) | |
| 345-464, gnl|hg17|chr1 (227382920-227383062) | |
| 345-464, gnl|Hg17|chr1 (227383039-227382920) | |
| 345-464, gnl|loxAfr1|scaffold_114777 (2957-3099) | |
| 345-464, gnl|mm7|chr8 (123282782-123282924) | |
| 345-464, gnl|Mm7|chr8 (123282901-123282782) | |
| 345-464, gnl|monDom2|scaffold_13 (59485458-59485600) | |
| 345-464, gnl|oryCun1|scaffold_214021 (52533-52391) | |
| 345-464, gnl|panTro1|chr1 (211233195-211233337) | |
| 345-464, gnl|rheMac2|chr1 (226018845-226018703) | |
| 345-464, gnl|rn3|chr19 (54880361-54880503) | |
| 345-464, gnl|tetNig1|chr14 (1355649-1355528) | |
| 345-464, gnl|xenTro1|scaffold_243 (171223-171103) | |
| 566-682, gnl|bosTau2|chr28 (1400059-1399943) | |
| 566-682, gnl|Hg17|chr1 (227378754-227378638) | |
| 566-682, gnl|Mm7|chr8 (123279854-123279740) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-104, gnl|bosTau2|chr28 (1443242-1443139) | |
| 1-104, gnl|canFam2|chr4 (11424826-11424750) | |
| 1-104, gnl|dasNov1|scaffold_38714 (46136-46212) | |
| 1-104, gnl|echTel1|scaffold_263879 (484-405) | |
| 1-104, gnl|galGal2|chr3 (36746335-36746391) | |
| 1-104, gnl|hg17|chr1 (227421036-227421115) | |
| 1-104, gnl|Hg17|chr1 (227421147-227421041) | |
| 1-104, gnl|mm7|chr8 (123308879-123308946) | |
| 1-104, gnl|Mm7|chr8 (123308978-123308884) | |
| 1-104, gnl|monDom2|scaffold_13 (59543168-59543250) | |
| 1-104, gnl|oryCun1|scaffold_214021 (11135-11056) | |
| 1-104, gnl|panTro1|chr1 (211271478-211271557) | |
| 1-104, gnl|rheMac2|chr1 (225979000-225978921) | |
| 1-104, gnl|rn3|chr19 (54909197-54909264) | |
| 345-464, gnl|bosTau2|chr28 (1404279-1404160) | |
| 345-464, gnl|canFam2|chr4 (11463272-11463131) | |
| 345-464, gnl|danRer3|chr17 (9573792-9573650) | |
| 345-464, gnl|echTel1|scaffold_254612 (4024-3882) | |
| 345-464, gnl|fr1|chrUn (312212501-312212621) | |
| 345-464, gnl|galGal2|chr3 (36735922-36736069) | |
| 345-464, gnl|hg17|chr1 (227382920-227383062) | |
| 345-464, gnl|Hg17|chr1 (227383039-227382920) | |
| 345-464, gnl|loxAfr1|scaffold_114777 (2957-3099) | |
| 345-464, gnl|mm7|chr8 (123282782-123282924) | |
| 345-464, gnl|Mm7|chr8 (123282901-123282782) | |
| 345-464, gnl|monDom2|scaffold_13 (59485458-59485600) | |
| 345-464, gnl|oryCun1|scaffold_214021 (52533-52391) | |
| 345-464, gnl|panTro1|chr1 (211233195-211233337) | |
| 345-464, gnl|rheMac2|chr1 (226018845-226018703) | |
| 345-464, gnl|rn3|chr19 (54880361-54880503) | |
| 345-464, gnl|tetNig1|chr14 (1355649-1355528) | |
| 345-464, gnl|xenTro1|scaffold_243 (171223-171103) | |
| 566-682, gnl|bosTau2|chr28 (1400059-1399943) | |
| 566-682, gnl|Hg17|chr1 (227378754-227378638) | |
| 566-682, gnl|Mm7|chr8 (123279854-123279740) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.114797) | |
| cty (0.10408) |