Non-Coding RNA Search

Ss1.1-rpigcb_12557.5

Sequence:


               
               CGAGCCTGGTGCCGAGCGTAGGAAGCTCTGCAGGCGGCGGCGGCGGCGGCAGCGGCGGCG
TCCTGAGCTCCGGGGCAGCCCGCTCCCTCCTCCCGGTCTCTTCTTTCCTGCGGTCAGCAT
GAAAGCCTTCAGTCCAGTGAGGTCCGTTAGGAAAAACAGCCTTTCGGACCACAGCCTGGG
CATCTCCCGGAGCAAAACCCCGGTGGACGACCCGATGAGCCTGCTGTACAACATGAACGA
CTGCTACTCCAAGCTCAAGGAGCTGGTGCCCAGCATCCCTCAGAACAAGAAGGTGAGCAA
GATGGAAATCCTGCAGCACGTCATCGACTACATCTTGGACCTGCAGATCGCCCTGGACTC
GCACCCCACTATTGTCAGCCTGCACCACCAGCGACCCGGGCAGAGCCAGGCATCCAGGAC
GCCGCTGACCACCCTAAATACGGACATCAGCATCCTGTCCTTGCAGGCTTCTGAATTCCC
TTCTGAGTTAATGTCAAGTGACAGCAAAGCGCTCTGTGGCTGAATAAATGGTGTTCATGA
CTCTTCCCCCCCCCCACACCCCCTTTGCACAACAACAGCAACAAATCCACAGGCTCTTTT
AAGGCGCTGAACTTATTTTTCAACCATTTCCCAAGGAGGACAAGTCAAATGGACCTTTAA
AAAAAAAAAAAAAATGGAAGGAAAACTAAGAACGGTCGACTTGCCCAGTGTTCTCTGACC
TGGACTGTGTACTAGTTATTTATGAAAAAGACTTTTAAATGCCCTTTCTGCAGTTGGAAG
GTTTTCTTTATATACTATTCCCACCATGGGGAGCGAAAAACGTTAAAATCACAAGGAATT
GCCCAATTTAAGCAGACTTTGCCTTTTTTCAAAGGTGGAGCGTGAATACCAGAAGGATCC
AGTATTCAGTTACTTACATGAAGTCTTTCGGTCAGAAATTACCTTTTTGACGCAAGCCTA
CTGAATGCTGTGTATATATTTATATATAAATATATATATATATTGAGTGAAACCTCGTGA
ACTCTTTCCTTAGAGTTTCCTTGTACAGCGGCAGAGATGTCAATTTCTGCATCAAAGTGT
AATGATGTACTTATTCATGCTAAACTTTTTATAAAAGTTTAGTTGTAAACTTAACCCTTT
TATACAAAATAAATCAAGTGTGTTTATTGAATGGTGATTGCCTGCTTTATTTCAGAGGAC
CAGTGCTTTGATTTTTATCATGCTATGTTATAACTGAACCCAAATAAATACAAGTTCAAA
TTTATGTAGACTGTATAAGATTATAATAAAAACATGTCTGAAATCAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGCCTGGTGCCGAGCGTAGGAAGCTCTGCAGGCGGCGGCGGCGGCGGCAGCGGCGGCG
TCCTGAGCTCCGGGGCAGCCCGCTCCCTCCTCCCGGTCTCTTCTTTCCTGCGGTCAGCAT
GAAAGCCTTCAGTCCAGTGAGGTCCGTTAGGAAAAACAGCCTTTCGGACCACAGCCTGGG
CATCTCCCGGAGCAAAACCCCGGTGGACGACCCGATGAGCCTGCTGTACAACATGAACGA
CTGCTACTCCAAGCTCAAGGAGCTGGTGCCCAGCATCCCTCAGAACAAGAAGGTGAGCAA
GATGGAAATCCTGCAGCACGTCATCGACTACATCTTGGACCTGCAGATCGCCCTGGACTC
GCACCCCACTATTGTCAGCCTGCACCACCAGCGACCCGGGCAGAGCCAGGCATCCAGGAC
GCCGCTGACCACCCTAAATACGGACATCAGCATCCTGTCCTTGCAGGCTTCTGAATTCCC
TTCTGAGTTAATGTCAAGTGACAGCAAAGCGCTCTGTGGCTGAATAAATGGTGTTCATGA
CTCTTCCCCCCCCCCACACCCCCTTTGCACAACAACAGCAACAAATCCACAGGCTCTTTT
AAGGCGCTGAACTTATTTTTCAACCATTTCCCAAGGAGGACAAGTCAAATGGACCTTTAA
AAAAAAAAAAAAAATGGAAGGAAAACTAAGAACGGTCGACTTGCCCAGTGTTCTCTGACC
TGGACTGTGTACTAGTTATTTATGAAAAAGACTTTTAAATGCCCTTTCTGCAGTTGGAAG
GTTTTCTTTATATACTATTCCCACCATGGGGAGCGAAAAACGTTAAAATCACAAGGAATT
GCCCAATTTAAGCAGACTTTGCCTTTTTTCAAAGGTGGAGCGTGAATACCAGAAGGATCC
AGTATTCAGTTACTTACATGAAGTCTTTCGGTCAGAAATTACCTTTTTGACGCAAGCCTA
CTGAATGCTGTGTATATATTTATATATAAATATATATATATATTGAGTGAAACCTCGTGA
ACTCTTTCCTTAGAGTTTCCTTGTACAGCGGCAGAGATGTCAATTTCTGCATCAAAGTGT
AATGATGTACTTATTCATGCTAAACTTTTTATAAAAGTTTAGTTGTAAACTTAACCCTTT
TATACAAAATAAATCAAGTGTGTTTATTGAATGGTGATTGCCTGCTTTATTTCAGAGGAC
CAGTGCTTTGATTTTTATCATGCTATGTTATAACTGAACCCAAATAAATACAAGTTCAAA
TTTATGTAGACTGTATAAGATTATAATAAAAACATGTCTGAAATCAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62822261|gb|AAY14810.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62822261|gb|AAY14810.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               112-351, - strand, RNAz p=0.966917
               

               
               813-1154, + strand, RNAz p=0.997626

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-351, - strand, RNAz p=0.966917
               

               
               813-1154, + strand, RNAz p=0.997626

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002166, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002166, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-467, gnl|bosTau2|chr11 (69160786-69161257)
               

               
               1-467, gnl|Hg17|chr2 (8772793-8773242)
               

               
               1-467, gnl|Mm7|chr12 (22932583-22932164)
               


               
               561-1307, gnl|bosTau2|chr11 (69162466-69163213)
               

               
               561-1307, gnl|Hg17|chr2 (8774432-8775181)
               

               
               561-1307, gnl|Mm7|chr12 (22931058-22930301)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-467, gnl|bosTau2|chr11 (69160786-69161257)
               

               
               1-467, gnl|Hg17|chr2 (8772793-8773242)
               

               
               1-467, gnl|Mm7|chr12 (22932583-22932164)
               


               
               561-1307, gnl|bosTau2|chr11 (69162466-69163213)
               

               
               561-1307, gnl|Hg17|chr2 (8774432-8775181)
               

               
               561-1307, gnl|Mm7|chr12 (22931058-22930301)

Expressed library(ies): 49 entry(ies)

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Expressed library(ies): 49 entry(ies)

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               lyg (2.12964)
               

               
               gul (1.42071)
               

               
               fce (1.35796)
               

               
               sug (1.01833)
               

               
               lun (0.752445)
               

               
               ebs (0.709807)
               

               
               kid (0.648677)
               

               
               cty (0.62448)
               

               
               eje (0.494169)
               

               
               ecc (0.46014)
               

               
               spc (0.453463)
               

               
               spl (0.429553)
               

               
               ute (0.398353)
               

               
               aor (0.390549)
               

               
               ova (0.387397)
               

               
               sag (0.36543)
               

               
               rec (0.346141)
               

               
               mcp (0.341297)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               fco (0.314416)
               

               
               ski (0.29347)
               

               
               lnt (0.284616)
               

               
               nmm (0.265604)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               eep (0.245128)
               

               
               clu (0.239292)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 49 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (2.12964)
               

               
               gul (1.42071)
               

               
               fce (1.35796)
               

               
               sug (1.01833)
               

               
               lun (0.752445)
               

               
               ebs (0.709807)
               

               
               kid (0.648677)
               

               
               cty (0.62448)
               

               
               eje (0.494169)
               

               
               ecc (0.46014)
               

               
               spc (0.453463)
               

               
               spl (0.429553)
               

               
               ute (0.398353)
               

               
               aor (0.390549)
               

               
               ova (0.387397)
               

               
               sag (0.36543)
               

               
               rec (0.346141)
               

               
               mcp (0.341297)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               fco (0.314416)
               

               
               ski (0.29347)
               

               
               lnt (0.284616)
               

               
               nmm (0.265604)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               eep (0.245128)
               

               
               clu (0.239292)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

	112-351, - strand, RNAz p=0.966917
	813-1154, + strand, RNAz p=0.997626

	1-467, gnl\|bosTau2\|chr11 (69160786-69161257)
	1-467, gnl\|Hg17\|chr2 (8772793-8773242)
	1-467, gnl\|Mm7\|chr12 (22932583-22932164)

	561-1307, gnl\|bosTau2\|chr11 (69162466-69163213)
	561-1307, gnl\|Hg17\|chr2 (8774432-8775181)
	561-1307, gnl\|Mm7\|chr12 (22931058-22930301)

	lyg (2.12964)
	gul (1.42071)
	fce (1.35796)
	sug (1.01833)
	lun (0.752445)
	ebs (0.709807)
	kid (0.648677)
	cty (0.62448)
	eje (0.494169)
	ecc (0.46014)
	spc (0.453463)
	spl (0.429553)
	ute (0.398353)
	aor (0.390549)
	ova (0.387397)
	sag (0.36543)
	rec (0.346141)
	mcp (0.341297)
	vin (0.332557)
	nco (0.323468)
	fco (0.314416)
	ski (0.29347)
	lnt (0.284616)
	nmm (0.265604)
	thg (0.253582)
	bla (0.248694)
	eep (0.245128)
	clu (0.239292)
	jej (0.197844)
	nlu (0.191681)
	nep (0.183925)
	ill (0.175593)
	sin (0.174948)
	duo (0.172801)
	cut (0.169924)
	nje (0.16592)
	csp (0.161186)
	cli (0.152812)
	eli (0.151814)
	cag (0.151194)
	bfe (0.149858)
	fat (0.147427)
	lin (0.145603)
	ssp (0.13552)
	cov (0.132153)
	ret (0.128733)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)