Non-Coding RNA Search

Ss1.1-rpigcb_12875.5

Sequence:


               
               CCGGGCGGGCGAGCGAGGGCCGCGGACGGCAGGCGCGACAGTTCTGAGCTGTGTAGCTCT
AGGAAGTGAAACATTTGTTCAGAAGAAGAGAGTTGACTTTCCTAAGAATACATTTGGCTT
TTCACCATGCGGTTTGGAAAACCTAAGGGAGGTATTTCTCGGAGCTCAAGCCAAGGAAAA
GCCTATGAGAACCAGCACAAAACAGGCCGACAGCGACAGAAATGGGGAGTGACTGTTCGG
TTTGACTCTGGCTTGAGTAGACTGAGAAGAAGCTTGGACGAGAAGCCTTATAAATGTACT
GAATGTGAAAAGAGTTTCAGTCAGAGCTCAACTCTTTTTCAACACCAGAAGATCCATACT
GGAAAGAAATCCCATAAATGTGCAGATTGTGGAAAAAGTTTCTTTCAGAGTTCAAATCTG
ATTCAGCATCGACGGATCCATACTGGGGAAAAGCCCTATAAATGTGATGAGTGTGGAGAA
AGGTTTAAACAGAGCTCAAATCTTATTCAGCACCAGAGAATCCATACTGGAGAAAAGCCC
TATCAGTGTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGCGGGCGAGCGAGGGCCGCGGACGGCAGGCGCGACAGTTCTGAGCTGTGTAGCTCT
AGGAAGTGAAACATTTGTTCAGAAGAAGAGAGTTGACTTTCCTAAGAATACATTTGGCTT
TTCACCATGCGGTTTGGAAAACCTAAGGGAGGTATTTCTCGGAGCTCAAGCCAAGGAAAA
GCCTATGAGAACCAGCACAAAACAGGCCGACAGCGACAGAAATGGGGAGTGACTGTTCGG
TTTGACTCTGGCTTGAGTAGACTGAGAAGAAGCTTGGACGAGAAGCCTTATAAATGTACT
GAATGTGAAAAGAGTTTCAGTCAGAGCTCAACTCTTTTTCAACACCAGAAGATCCATACT
GGAAAGAAATCCCATAAATGTGCAGATTGTGGAAAAAGTTTCTTTCAGAGTTCAAATCTG
ATTCAGCATCGACGGATCCATACTGGGGAAAAGCCCTATAAATGTGATGAGTGTGGAGAA
AGGTTTAAACAGAGCTCAAATCTTATTCAGCACCAGAGAATCCATACTGGAGAAAAGCCC
TATCAGTGTGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57107423|ref|XP_543910.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57107423|ref|XP_543910.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               280-552, gnl|bosTau2|chr10 (8996678-8996406)
               

               
               280-552, gnl|Hg17|chr19 (42818483-42818211)
               

               
               280-552, gnl|Mm7|chr2 (127310109-127309837)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               280-552, gnl|bosTau2|chr10 (8996678-8996406)
               

               
               280-552, gnl|Hg17|chr19 (42818483-42818211)
               

               
               280-552, gnl|Mm7|chr2 (127310109-127309837)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               cty (0.10408)

	280-552, gnl\|bosTau2\|chr10 (8996678-8996406)
	280-552, gnl\|Hg17\|chr19 (42818483-42818211)
	280-552, gnl\|Mm7\|chr2 (127310109-127309837)