Non-Coding RNA Search

Ss1.1-rpigcb_13010.5

Sequence:


               
               GTGAAATAAAAACTAATTCACCTCTTTTCCTTTCCTTTTTGCCTAGGTTCCTCCATATGC
CGTTGCCCAAGGGAGAAGGGCACTTTCCTATGTCCTTGCAAGAAAGATGAATGCGCTTCA
CATGCTGGATATTAAAGAGCATAATGGACAGAGTGCCTTTCAGGTGGCAGTGGCTGCCAA
TCAGCACCTCATTGTGCAGGATCTGGTGAACCTCGGGGCCCAGGTTAATACCACTGACTG
CTGGGGAAGAACCCCTCTGCATGTTTGTGCAGAGAAGGGCCACTCCCAGGTGCTTCAGGC
AATTCAGAAGGGAGCCGTGAGGAGCAATCAGTTCGTGGATCTTGAGGCAACTAACTATGA
TGGCCTGACTCCTCTACACTGTGCAGTTATGGCACACAACGCTGTGGTGCATGAACTCCA
GAGAAATCAACAGCCCCATTCACCTGAAGTTCAGGAGCTTTTACTGAAAAATAAGAGTCT
AGTTGATACAATTAAGGGTTTGATTCAAATGGGAGCTGCAGTGGAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAATAAAAACTAATTCACCTCTTTTCCTTTCCTTTTTGCCTAGGTTCCTCCATATGC
CGTTGCCCAAGGGAGAAGGGCACTTTCCTATGTCCTTGCAAGAAAGATGAATGCGCTTCA
CATGCTGGATATTAAAGAGCATAATGGACAGAGTGCCTTTCAGGTGGCAGTGGCTGCCAA
TCAGCACCTCATTGTGCAGGATCTGGTGAACCTCGGGGCCCAGGTTAATACCACTGACTG
CTGGGGAAGAACCCCTCTGCATGTTTGTGCAGAGAAGGGCCACTCCCAGGTGCTTCAGGC
AATTCAGAAGGGAGCCGTGAGGAGCAATCAGTTCGTGGATCTTGAGGCAACTAACTATGA
TGGCCTGACTCCTCTACACTGTGCAGTTATGGCACACAACGCTGTGGTGCATGAACTCCA
GAGAAATCAACAGCCCCATTCACCTGAAGTTCAGGAGCTTTTACTGAAAAATAAGAGTCT
AGTTGATACAATTAAGGGTTTGATTCAAATGGGAGCTGCAGTGGAAGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-151, gnl|bosTau2|chr11 (21558025-21557875)
               

               
               1-151, gnl|Hg17|chr3 (103056066-103056217)
               

               
               1-151, gnl|Mm7|chr16 (55658079-55657931)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-151, gnl|bosTau2|chr11 (21558025-21557875)
               

               
               1-151, gnl|Hg17|chr3 (103056066-103056217)
               

               
               1-151, gnl|Mm7|chr16 (55658079-55657931)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spl (0.143184)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	1-151, gnl\|bosTau2\|chr11 (21558025-21557875)
	1-151, gnl\|Hg17\|chr3 (103056066-103056217)
	1-151, gnl\|Mm7\|chr16 (55658079-55657931)