Non-Coding RNA Search

Ss1.1-rpigcb_13037.5

Sequence:


               
               TTCATGACGAGCTTCTCAGCACCATGTTTTCAGAGTCATCGCTGTTGTGCACAAATTGGG
GAGAACATGAGTGCTTATGCTGAGGGCTCCTCCTTCCCCCCCTGCCCTTCCAGTGGCCAT
GCAGCAGCCTACCACCTGGCACACGACAGCCATGGATGACTTCGCCAGCTTCCAGCGCAA
GTGGTTCGAGGTGGCCTTTGTGGCTGAGGAGCTCTTGCACTCCGAGATCCCTGCCTTCCT
GCTGCCCTGGCTGCCCAGCCGGCCGGCCTCCTACGCTAGCAGACACAGCTCCTTCAGCCG
CAGCTTTGGGGGGCGCAGCCAGGCAGCTGCACTTTTAGCTGCCACTGTCCCGGAGCAGAG
GACCGTGACCCTAGATGTGGATGTGAACAACCGCACGGACCGACTGGAGTGGTGCAGCTG
TTATTACCACGGTAACTTCTCGCTGAATGCGGCCTTCGAGATCAAGCTACACTGGATGGC
AGTAACTGCCGCAGTGCTCTTTGAGATGGTCCAAGGTTGGCACCGCAAGGCCACCTCCTG
TGGCTTTCTGTTGGTGCCGGTGCTGGAGGGTCCCTTTGCACTGCCCAGTTATCTGTATGG
CGACCCACTCCGGGCCCAGCTCTTCATCCCGCTCAACATCAGCTGTCTGCTCAAGGAGGG
CAGTGAGCACCTGTTTGACAACTTTGAACCAGAAACATACGGGGATCGAATGCACCTTTT
CCAGGAAGCCATTGCACACAGGTTGGGTTTGGTCCAAGATAAATATTCTGCCTCTGCTTT
TAACTTCCCTGCTGAGAACAAACCTCAGTACATCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCATGACGAGCTTCTCAGCACCATGTTTTCAGAGTCATCGCTGTTGTGCACAAATTGGG
GAGAACATGAGTGCTTATGCTGAGGGCTCCTCCTTCCCCCCCTGCCCTTCCAGTGGCCAT
GCAGCAGCCTACCACCTGGCACACGACAGCCATGGATGACTTCGCCAGCTTCCAGCGCAA
GTGGTTCGAGGTGGCCTTTGTGGCTGAGGAGCTCTTGCACTCCGAGATCCCTGCCTTCCT
GCTGCCCTGGCTGCCCAGCCGGCCGGCCTCCTACGCTAGCAGACACAGCTCCTTCAGCCG
CAGCTTTGGGGGGCGCAGCCAGGCAGCTGCACTTTTAGCTGCCACTGTCCCGGAGCAGAG
GACCGTGACCCTAGATGTGGATGTGAACAACCGCACGGACCGACTGGAGTGGTGCAGCTG
TTATTACCACGGTAACTTCTCGCTGAATGCGGCCTTCGAGATCAAGCTACACTGGATGGC
AGTAACTGCCGCAGTGCTCTTTGAGATGGTCCAAGGTTGGCACCGCAAGGCCACCTCCTG
TGGCTTTCTGTTGGTGCCGGTGCTGGAGGGTCCCTTTGCACTGCCCAGTTATCTGTATGG
CGACCCACTCCGGGCCCAGCTCTTCATCCCGCTCAACATCAGCTGTCTGCTCAAGGAGGG
CAGTGAGCACCTGTTTGACAACTTTGAACCAGAAACATACGGGGATCGAATGCACCTTTT
CCAGGAAGCCATTGCACACAGGTTGGGTTTGGTCCAAGATAAATATTCTGCCTCTGCTTT
TAACTTCCCTGCTGAGAACAAACCTCAGTACATCCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61867416|ref|XP_615268.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61867416|ref|XP_615268.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-336, gnl|bosTau2|chr17 (43343063-43343391)
               

               
               1-336, gnl|Hg17|chr22 (30599948-30600290)
               

               
               1-336, gnl|Mm7|chr5 (32037942-32038288)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-336, gnl|bosTau2|chr17 (43343063-43343391)
               

               
               1-336, gnl|Hg17|chr22 (30599948-30600290)
               

               
               1-336, gnl|Mm7|chr5 (32037942-32038288)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbr (0.127975)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.127975)
               

               
               cty (0.10408)

	1-336, gnl\|bosTau2\|chr17 (43343063-43343391)
	1-336, gnl\|Hg17\|chr22 (30599948-30600290)
	1-336, gnl\|Mm7\|chr5 (32037942-32038288)