Ss1.1-rpigcb_13058.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCCTGACAGGCTCGACGCTCTCCTTTCTGCAGTTCAAGGGAAAGACGAGATCTTGCAC AAGGCGCCCCGACTCTGTCCTCCGCAAAGGAAGGAGGCCATGGAGACTCTGGGGCTGCTC CTCCTGCTCTGGGTTGCAGAGCTGTCCCGGGCACACAACACCTCGGTGTTCCAGGGCACG GCCGGCCAGTCCCTGCGGGTCTCCTGCTCCTACAACTCCTTGAAGCACTGGGGGAGACGT AAAGCCTGGTGCCGCCAGCTGGGCGAAGAGGGCCTGTGCCAGCATGTGGTCAGCACCCAC CCCACCTGGCTGCTGTCCTTCCTGAAGCGGCGCAACGGGAGCACGGCCATCACGGACGAT GCCCTGGGCGGCACACTCACCATTACGCTGCGCAATCTTCAAGCCCACGACGCTGGCCTC TACCAGTGCCAGAGCCTCCACGGTAGCGAGGCCGACACCCTCAAGAAGGTCCTGGTGGAG GTGCTGGCTGACCCCCTTGAATCCCAGTCCAAGAGCTTCCAGGATGTCCAGATGGAGCAC AGCATCTCCAGGAACCTTTCGGAGGAGAGCCTCTTCCCACCCACCTCCACCCTTTTCCTC CTGGCCTGCGTCTTTCTCAGCAAGCTTCTAGTAGCCAGCGCCCTCTGGGCTGCAGCCTGG CATGGGCACAAACAGAGGACTTCCCCAGCCGGTGGGCTGGACTGTGGCCGTGACCCAGGC GACCAGGACCAAACCCTGACAGATGAGCTTGGCGAGAGCAGTGACCAGGACCAAACCTTG ACAGAGCTGAGAGACACGTGAGAGAAGCGGAGAGGCCAGCAGAGGTCTGCATGGACCAGC CCAGCCAGCACACTCACCCCTTGGCCACTGAGTCTCCTGGTTCTGCTTTGGCAAAAGGCC ACTCTGCCTGTACCCTGCTTCCTCCGGCCTCTGGAAGTGGAGATTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCCTGACAGGCTCGACGCTCTCCTTTCTGCAGTTCAAGGGAAAGACGAGATCTTGCAC AAGGCGCCCCGACTCTGTCCTCCGCAAAGGAAGGAGGCCATGGAGACTCTGGGGCTGCTC CTCCTGCTCTGGGTTGCAGAGCTGTCCCGGGCACACAACACCTCGGTGTTCCAGGGCACG GCCGGCCAGTCCCTGCGGGTCTCCTGCTCCTACAACTCCTTGAAGCACTGGGGGAGACGT AAAGCCTGGTGCCGCCAGCTGGGCGAAGAGGGCCTGTGCCAGCATGTGGTCAGCACCCAC CCCACCTGGCTGCTGTCCTTCCTGAAGCGGCGCAACGGGAGCACGGCCATCACGGACGAT GCCCTGGGCGGCACACTCACCATTACGCTGCGCAATCTTCAAGCCCACGACGCTGGCCTC TACCAGTGCCAGAGCCTCCACGGTAGCGAGGCCGACACCCTCAAGAAGGTCCTGGTGGAG GTGCTGGCTGACCCCCTTGAATCCCAGTCCAAGAGCTTCCAGGATGTCCAGATGGAGCAC AGCATCTCCAGGAACCTTTCGGAGGAGAGCCTCTTCCCACCCACCTCCACCCTTTTCCTC CTGGCCTGCGTCTTTCTCAGCAAGCTTCTAGTAGCCAGCGCCCTCTGGGCTGCAGCCTGG CATGGGCACAAACAGAGGACTTCCCCAGCCGGTGGGCTGGACTGTGGCCGTGACCCAGGC GACCAGGACCAAACCCTGACAGATGAGCTTGGCGAGAGCAGTGACCAGGACCAAACCTTG ACAGAGCTGAGAGACACGTGAGAGAAGCGGAGAGGCCAGCAGAGGTCTGCATGGACCAGC CCAGCCAGCACACTCACCCCTTGGCCACTGAGTCTCCTGGTTCTGCTTTGGCAAAAGGCC ACTCTGCCTGTACCCTGCTTCCTCCGGCCTCTGGAAGTGGAGATTTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 545-659, - strand, RNAz p=0.612307 | |
| 600-711, + strand, RNAz p=0.796459 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 545-659, - strand, RNAz p=0.612307 | |
| 600-711, + strand, RNAz p=0.796459 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 137-490, gnl|bosTau2|chr23 (14247647-14248000) | |
| 137-490, gnl|canFam2|chr12 (12930633-12931025) | |
| 137-490, gnl|dasNov1|scaffold_106266 (2157-1764) | |
| 137-490, gnl|echTel1|scaffold_322698 (4532-4920) | |
| 137-490, gnl|galGal2|chr26 (3286718-3287081) | |
| 137-490, gnl|hg17|chr6 (41236970-41237359) | |
| 137-490, gnl|Hg17|chr6 (41237332-41236979) | |
| 137-490, gnl|loxAfr1|scaffold_59443 (4248-4638) | |
| 137-490, gnl|mm7|chr17 (46493486-46493103) | |
| 137-490, gnl|Mm7|chr17 (46493122-46493475) | |
| 137-490, gnl|monDom2|scaffold_42 (2337606-2337233) | |
| 137-490, gnl|oryCun1|scaffold_203282 (18590-18205) | |
| 137-490, gnl|panTro1|chr5 (41802330-41802719) | |
| 137-490, gnl|rheMac2|chr4 (40984509-40984898) | |
| 137-490, gnl|rn3|chr9 (8062854-8063248) | |
| 545-763, gnl|bosTau2|chr23 (14250274-14250496) | |
| 545-763, gnl|canFam2|chr12 (12928003-12928338) | |
| 545-763, gnl|dasNov1|scaffold_106266 (4535-4209) | |
| 545-763, gnl|echTel1|scaffold_50608 (607-928) | |
| 545-763, gnl|hg17|chr6 (41234473-41234796) | |
| 545-763, gnl|Hg17|chr6 (41234790-41234558) | |
| 545-763, gnl|loxAfr1|scaffold_59443 (492-817) | |
| 545-763, gnl|mm7|chr17 (46496701-46496405) | |
| 545-763, gnl|Mm7|chr17 (46496406-46496618) | |
| 545-763, gnl|monDom2|scaffold_42 (2342625-2342338) | |
| 545-763, gnl|panTro1|chr5 (41799831-41800154) | |
| 545-763, gnl|rheMac2|chr4 (40982005-40982328) | |
| 545-763, gnl|rn3|chr9 (8059262-8059556) | |
| 809-937, gnl|bosTau2|chr23 (14250595-14250727) | |
| 809-937, gnl|canFam2|chr12 (12927758-12927997) | |
| 809-937, gnl|dasNov1|scaffold_106266 (4760-4543) | |
| 809-937, gnl|echTel1|scaffold_50608 (352-594) | |
| 809-937, gnl|hg17|chr6 (41234224-41234472) | |
| 809-937, gnl|Hg17|chr6 (41234464-41234333) | |
| 809-937, gnl|loxAfr1|scaffold_59443 (257-482) | |
| 809-937, gnl|mm7|chr17 (46496968-46496704) | |
| 809-937, gnl|Mm7|chr17 (46496710-46496848) | |
| 809-937, gnl|oryCun1|scaffold_198925 (10893-11163) | |
| 809-937, gnl|panTro1|chr5 (41799582-41799830) | |
| 809-937, gnl|rheMac2|chr4 (40981756-40982004) | |
| 809-937, gnl|rn3|chr9 (8058996-8059259) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 137-490, gnl|bosTau2|chr23 (14247647-14248000) | |
| 137-490, gnl|canFam2|chr12 (12930633-12931025) | |
| 137-490, gnl|dasNov1|scaffold_106266 (2157-1764) | |
| 137-490, gnl|echTel1|scaffold_322698 (4532-4920) | |
| 137-490, gnl|galGal2|chr26 (3286718-3287081) | |
| 137-490, gnl|hg17|chr6 (41236970-41237359) | |
| 137-490, gnl|Hg17|chr6 (41237332-41236979) | |
| 137-490, gnl|loxAfr1|scaffold_59443 (4248-4638) | |
| 137-490, gnl|mm7|chr17 (46493486-46493103) | |
| 137-490, gnl|Mm7|chr17 (46493122-46493475) | |
| 137-490, gnl|monDom2|scaffold_42 (2337606-2337233) | |
| 137-490, gnl|oryCun1|scaffold_203282 (18590-18205) | |
| 137-490, gnl|panTro1|chr5 (41802330-41802719) | |
| 137-490, gnl|rheMac2|chr4 (40984509-40984898) | |
| 137-490, gnl|rn3|chr9 (8062854-8063248) | |
| 545-763, gnl|bosTau2|chr23 (14250274-14250496) | |
| 545-763, gnl|canFam2|chr12 (12928003-12928338) | |
| 545-763, gnl|dasNov1|scaffold_106266 (4535-4209) | |
| 545-763, gnl|echTel1|scaffold_50608 (607-928) | |
| 545-763, gnl|hg17|chr6 (41234473-41234796) | |
| 545-763, gnl|Hg17|chr6 (41234790-41234558) | |
| 545-763, gnl|loxAfr1|scaffold_59443 (492-817) | |
| 545-763, gnl|mm7|chr17 (46496701-46496405) | |
| 545-763, gnl|Mm7|chr17 (46496406-46496618) | |
| 545-763, gnl|monDom2|scaffold_42 (2342625-2342338) | |
| 545-763, gnl|panTro1|chr5 (41799831-41800154) | |
| 545-763, gnl|rheMac2|chr4 (40982005-40982328) | |
| 545-763, gnl|rn3|chr9 (8059262-8059556) | |
| 809-937, gnl|bosTau2|chr23 (14250595-14250727) | |
| 809-937, gnl|canFam2|chr12 (12927758-12927997) | |
| 809-937, gnl|dasNov1|scaffold_106266 (4760-4543) | |
| 809-937, gnl|echTel1|scaffold_50608 (352-594) | |
| 809-937, gnl|hg17|chr6 (41234224-41234472) | |
| 809-937, gnl|Hg17|chr6 (41234464-41234333) | |
| 809-937, gnl|loxAfr1|scaffold_59443 (257-482) | |
| 809-937, gnl|mm7|chr17 (46496968-46496704) | |
| 809-937, gnl|Mm7|chr17 (46496710-46496848) | |
| 809-937, gnl|oryCun1|scaffold_198925 (10893-11163) | |
| 809-937, gnl|panTro1|chr5 (41799582-41799830) | |
| 809-937, gnl|rheMac2|chr4 (40981756-40982004) | |
| 809-937, gnl|rn3|chr9 (8058996-8059259) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |