Ss1.1-rpigcb_13246.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCGAGTCGGGACTCGGCTTCTCCGACGCGGAGCCGGACACAGGCGAGGCCAAGGCTTAT GCAGGCAGAGATTTGGAGGAGCAGTTGCGGTCGGTGTCCAGTGTTGATGAACTCATGACT GTACTCTACCCCGAATACTGGAAAATGTACAAGTGTCAATTAAGGAAAGGAGGCTGGCAA CATAACAAAGAACAGGCCAGTGCCAATACAAGAACAGAAGAGACTCTCAAATTTGCTGCA GCACATTATAATGCAGAGATCTTGAAAAGTATTGATAATGAGTGGAGGAAGACTCAATGC ATGCCACGGGAGGTGTGTATAGATGTGGGGAAGGAGTTTGGAGCAGCAACAAACACCTTC TTTAAACCTCCATGTGTGTCCGTCTACAGATGTGGGGGCTGCTGCAACAGTGAGGGCCTA CAATGCATGAACACCAGCACAAGTTACCTCAGCAAGACGTTGTTTGAAATTACAGTGCCT CTATCTCAAGGCCCCAAACCAGTAACAATCAGCTTTGCCAATCACACTTCCTGCCGATGC ATGTCGAAGCTGGATGTTTACAGACAAGTCCATTCCATTATTAGACGTTCCCTGCCAGCA ACACTACCACAGTGCCAGGCTGCAAACAAGACTTGCCCCACAGACTACATATGGAATAAT CACTTCTGCAGGTGCCTGGCTCAGCAAGATTTTATTTTTTCCTCTAATGCCGGAGATGAC TCTGCGGATGGCTTCCATGACATCTGTGGCCCCAACAAGGAGCTGGATGAAGAGACCTGT CAGTGTGTGTGCAGAGGGGGGCTTCGACCTTCCAGCTGTGGACCCCACAAGGAGCTAGAC AGAAACTCATGCCAGTGTGTCTGTAAAAACAAACTTTTCCCCAACTCGTGTGGGGCCAAC CGAGAATTTGATGAAAACACATGCCAATGCGTATGTAAAAAAACCTGCCCAAGAAATCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCGAGTCGGGACTCGGCTTCTCCGACGCGGAGCCGGACACAGGCGAGGCCAAGGCTTAT GCAGGCAGAGATTTGGAGGAGCAGTTGCGGTCGGTGTCCAGTGTTGATGAACTCATGACT GTACTCTACCCCGAATACTGGAAAATGTACAAGTGTCAATTAAGGAAAGGAGGCTGGCAA CATAACAAAGAACAGGCCAGTGCCAATACAAGAACAGAAGAGACTCTCAAATTTGCTGCA GCACATTATAATGCAGAGATCTTGAAAAGTATTGATAATGAGTGGAGGAAGACTCAATGC ATGCCACGGGAGGTGTGTATAGATGTGGGGAAGGAGTTTGGAGCAGCAACAAACACCTTC TTTAAACCTCCATGTGTGTCCGTCTACAGATGTGGGGGCTGCTGCAACAGTGAGGGCCTA CAATGCATGAACACCAGCACAAGTTACCTCAGCAAGACGTTGTTTGAAATTACAGTGCCT CTATCTCAAGGCCCCAAACCAGTAACAATCAGCTTTGCCAATCACACTTCCTGCCGATGC ATGTCGAAGCTGGATGTTTACAGACAAGTCCATTCCATTATTAGACGTTCCCTGCCAGCA ACACTACCACAGTGCCAGGCTGCAAACAAGACTTGCCCCACAGACTACATATGGAATAAT CACTTCTGCAGGTGCCTGGCTCAGCAAGATTTTATTTTTTCCTCTAATGCCGGAGATGAC TCTGCGGATGGCTTCCATGACATCTGTGGCCCCAACAAGGAGCTGGATGAAGAGACCTGT CAGTGTGTGTGCAGAGGGGGGCTTCGACCTTCCAGCTGTGGACCCCACAAGGAGCTAGAC AGAAACTCATGCCAGTGTGTCTGTAAAAACAAACTTTTCCCCAACTCGTGTGGGGCCAAC CGAGAATTTGATGAAAACACATGCCAATGCGTATGTAAAAAAACCTGCCCAAGAAATCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 264-459, + strand, RNAz p=0.98421 | |
| 797-916, - strand, RNAz p=0.946814 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 264-459, + strand, RNAz p=0.98421 | |
| 797-916, - strand, RNAz p=0.946814 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 264-459, gnl|bosTau2|chr27 (2551007-2550812) | |
| 264-459, gnl|canFam2|chr16 (55919658-55919411) | |
| 264-459, gnl|danRer3|chr23 (29136308-29136068) | |
| 264-459, gnl|dasNov1|scaffold_2908 (57098-56845) | |
| 264-459, gnl|echTel1|scaffold_295900 (487-736) | |
| 264-459, gnl|fr1|chrUn (104710257-104710481) | |
| 264-459, gnl|galGal2|chr4 (45072160-45072411) | |
| 264-459, gnl|hg17|chr4 (178024073-178024324) | |
| 264-459, gnl|Hg17|chr4 (178024276-178024081) | |
| 264-459, gnl|loxAfr1|scaffold_49846 (9681-9430) | |
| 264-459, gnl|mm7|chr8 (52928425-52928171) | |
| 264-459, gnl|Mm7|chr8 (52928220-52928415) | |
| 264-459, gnl|monDom2|scaffold_9 (56332164-56332403) | |
| 264-459, gnl|oryCun1|scaffold_182169 (43296-43548) | |
| 264-459, gnl|panTro1|chr3 (195990034-195990285) | |
| 264-459, gnl|rheMac2|chr5 (168814696-168814946) | |
| 264-459, gnl|rn3|chr16 (40666077-40666331) | |
| 264-459, gnl|tetNig1|chrUn_random (53859674-53859448) | |
| 264-459, gnl|xenTro1|scaffold_25 (318933-318717) | |
| 718-959, gnl|bosTau2|chr27 (2487922-2487681) | |
| 718-959, gnl|Hg17|chr4 (177983824-177983583) | |
| 718-959, gnl|Mm7|chr8 (52950018-52950259) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 264-459, gnl|bosTau2|chr27 (2551007-2550812) | |
| 264-459, gnl|canFam2|chr16 (55919658-55919411) | |
| 264-459, gnl|danRer3|chr23 (29136308-29136068) | |
| 264-459, gnl|dasNov1|scaffold_2908 (57098-56845) | |
| 264-459, gnl|echTel1|scaffold_295900 (487-736) | |
| 264-459, gnl|fr1|chrUn (104710257-104710481) | |
| 264-459, gnl|galGal2|chr4 (45072160-45072411) | |
| 264-459, gnl|hg17|chr4 (178024073-178024324) | |
| 264-459, gnl|Hg17|chr4 (178024276-178024081) | |
| 264-459, gnl|loxAfr1|scaffold_49846 (9681-9430) | |
| 264-459, gnl|mm7|chr8 (52928425-52928171) | |
| 264-459, gnl|Mm7|chr8 (52928220-52928415) | |
| 264-459, gnl|monDom2|scaffold_9 (56332164-56332403) | |
| 264-459, gnl|oryCun1|scaffold_182169 (43296-43548) | |
| 264-459, gnl|panTro1|chr3 (195990034-195990285) | |
| 264-459, gnl|rheMac2|chr5 (168814696-168814946) | |
| 264-459, gnl|rn3|chr16 (40666077-40666331) | |
| 264-459, gnl|tetNig1|chrUn_random (53859674-53859448) | |
| 264-459, gnl|xenTro1|scaffold_25 (318933-318717) | |
| 718-959, gnl|bosTau2|chr27 (2487922-2487681) | |
| 718-959, gnl|Hg17|chr4 (177983824-177983583) | |
| 718-959, gnl|Mm7|chr8 (52950018-52950259) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| liv (0.146284) |