Ss1.1-rpigcb_13272.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAGCATTGTGTAATTCTAATCCAGAGTTGCTGAGAGCAGTGACTTTAGAGGCACCTTT CTTGGATGTTCTCAACACCATGATGGACACTACACTTCCTCTGACATTAGAAGAATTAGA AGAATGGGGGAATCCTTCATCTGATGAAAAACATAAGAACTACATAAAAAGTTACTGTCC CTATCAAAATATTAAACCCCAGCATTATCCTTCAGTTCACATCACAGCTTATGAAAATGA TGAGCGTGTACCTCTGAAAGGAATTGTAAACTATACTGAGAAACTCAAGGAAGCTGTTGC AGAGCATGCTAAGGACACTGGGGAAGGCTATCAAGCCCCCAATATTATTTTAGATATTCA GCCTGGAGGCAATCATGTGATTGAGGATTCTCACAAAAAGATTACAGCCCAAATTAAATT CCTATATGAGGAACTTGGACTTGACAGCACCAGTGTTTTCGAAAATCTCAAGAAATATCT AAAATTCTGAAGTGCTGCAATCAGTGGGAAATGGAAACACACTGAAATATTTCAGTCATA TTTCCAGTTGCGTTAACAAGAGTGAGTTTTTCAAGTTAGTAAATAATTTTTAAAAATGTG CTTCTCCATCTAAATATTGTTTTGTATTCAGCTCATTTGCTTATACTGTTGTCTCCATTG ATGCACATGCCCCTTAACCTAGGAAAGTAGCTTTCAAATTATGCTCCATAGAAGGACATA GAGAAGGGAATGAAGGAAGGATTGGTGGCAACAGAACTTTACCTTTCCTCCATCAGAAAA GCTTTGTTTCCGTATGATTTTCTTTGAACAGTTGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAGCATTGTGTAATTCTAATCCAGAGTTGCTGAGAGCAGTGACTTTAGAGGCACCTTT CTTGGATGTTCTCAACACCATGATGGACACTACACTTCCTCTGACATTAGAAGAATTAGA AGAATGGGGGAATCCTTCATCTGATGAAAAACATAAGAACTACATAAAAAGTTACTGTCC CTATCAAAATATTAAACCCCAGCATTATCCTTCAGTTCACATCACAGCTTATGAAAATGA TGAGCGTGTACCTCTGAAAGGAATTGTAAACTATACTGAGAAACTCAAGGAAGCTGTTGC AGAGCATGCTAAGGACACTGGGGAAGGCTATCAAGCCCCCAATATTATTTTAGATATTCA GCCTGGAGGCAATCATGTGATTGAGGATTCTCACAAAAAGATTACAGCCCAAATTAAATT CCTATATGAGGAACTTGGACTTGACAGCACCAGTGTTTTCGAAAATCTCAAGAAATATCT AAAATTCTGAAGTGCTGCAATCAGTGGGAAATGGAAACACACTGAAATATTTCAGTCATA TTTCCAGTTGCGTTAACAAGAGTGAGTTTTTCAAGTTAGTAAATAATTTTTAAAAATGTG CTTCTCCATCTAAATATTGTTTTGTATTCAGCTCATTTGCTTATACTGTTGTCTCCATTG ATGCACATGCCCCTTAACCTAGGAAAGTAGCTTTCAAATTATGCTCCATAGAAGGACATA GAGAAGGGAATGAAGGAAGGATTGGTGGCAACAGAACTTTACCTTTCCTCCATCAGAAAA GCTTTGTTTCCGTATGATTTTCTTTGAACAGTTGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 399-555, - strand, RNAz p=0.889185 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 399-555, - strand, RNAz p=0.889185 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 46-202, gnl|bosTau2|chr11 (13481084-13480929) | |
| 46-202, gnl|canFam2|chr10 (49864724-49864943) | |
| 46-202, gnl|danRer3|chr13 (6929167-6929349) | |
| 46-202, gnl|dasNov1|scaffold_37742 (3946-4162) | |
| 46-202, gnl|echTel1|scaffold_276830 (19542-19738) | |
| 46-202, gnl|fr1|chrUn (141842063-141842252) | |
| 46-202, gnl|galGal2|chr3 (21834365-21834554) | |
| 46-202, gnl|hg17|chr2 (44462032-44462242) | |
| 46-202, gnl|Hg17|chr2 (44462204-44462052) | |
| 46-202, gnl|loxAfr1|scaffold_8347 (50791-50584) | |
| 46-202, gnl|mm7|chr17 (83360976-83361191) | |
| 46-202, gnl|Mm7|chr17 (83361157-83360996) | |
| 46-202, gnl|monDom2|scaffold_1 (3048456-3048635) | |
| 46-202, gnl|oryCun1|scaffold_212921 (54889-54679) | |
| 46-202, gnl|panTro1|chr12 (46146031-46146241) | |
| 46-202, gnl|rheMac2|chr13 (44456444-44456654) | |
| 46-202, gnl|rn3|chr6 (8421369-8421575) | |
| 46-202, gnl|tetNig1|chr17 (10977128-10976949) | |
| 46-202, gnl|xenTro1|scaffold_30 (2594703-2594874) | |
| 399-816, gnl|bosTau2|chr11 (13478492-13478074) | |
| 399-816, gnl|Hg17|chr2 (44460237-44459827) | |
| 399-816, gnl|Mm7|chr17 (83359583-83359193) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-202, gnl|bosTau2|chr11 (13481084-13480929) | |
| 46-202, gnl|canFam2|chr10 (49864724-49864943) | |
| 46-202, gnl|danRer3|chr13 (6929167-6929349) | |
| 46-202, gnl|dasNov1|scaffold_37742 (3946-4162) | |
| 46-202, gnl|echTel1|scaffold_276830 (19542-19738) | |
| 46-202, gnl|fr1|chrUn (141842063-141842252) | |
| 46-202, gnl|galGal2|chr3 (21834365-21834554) | |
| 46-202, gnl|hg17|chr2 (44462032-44462242) | |
| 46-202, gnl|Hg17|chr2 (44462204-44462052) | |
| 46-202, gnl|loxAfr1|scaffold_8347 (50791-50584) | |
| 46-202, gnl|mm7|chr17 (83360976-83361191) | |
| 46-202, gnl|Mm7|chr17 (83361157-83360996) | |
| 46-202, gnl|monDom2|scaffold_1 (3048456-3048635) | |
| 46-202, gnl|oryCun1|scaffold_212921 (54889-54679) | |
| 46-202, gnl|panTro1|chr12 (46146031-46146241) | |
| 46-202, gnl|rheMac2|chr13 (44456444-44456654) | |
| 46-202, gnl|rn3|chr6 (8421369-8421575) | |
| 46-202, gnl|tetNig1|chr17 (10977128-10976949) | |
| 46-202, gnl|xenTro1|scaffold_30 (2594703-2594874) | |
| 399-816, gnl|bosTau2|chr11 (13478492-13478074) | |
| 399-816, gnl|Hg17|chr2 (44460237-44459827) | |
| 399-816, gnl|Mm7|chr17 (83359583-83359193) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) | |
| spl (0.143184) | |
| cty (0.10408) |