Non-Coding RNA Search

Ss1.1-rpigcb_13461.5

Sequence:


               
               ACAGAAGTTGCTTGCGGTCACCAAAGAAAATAAAGATCTCACAGCACAAATCCAGTCTTT
CGGGAAGTCAATGAGTTCCCTGCAAAATAGTAGAGATCACGCAAATGAGGAGCTTGAAGG
CCTGAAAAGGAAATATGAGGCCAGTCTGAAGGAGCTGGCACAGCTGAGAGAAGAACAGGG
CCTCTCAGGCAGGGAGAGAGAGGTTCTTGTTTCTAAAGCTGCATTTCCGGTGCACTCCAC
TGGGGATGACAGCTCACCCCACCTTGAGAAACTTAACCAGCAGCTTCTTTCCAAAGATGA
GCAATTGCTTCACTTGTCCTCACAGCTAGAAGATTCTTACAACCAAGTGCAGTCCTTTTC
CAGGGCTATGGCCAGTCTGCAGAACGAGAGAGATCGCCTGCTGAATGAACTGGAGAAATT
CCGCAAGACAGAGGAAGGGAAGCAGAGGTCTGCAGCCCCAACCACAACCAGCCCAGCTGA
AGTACAGAGTTTAAAAAAAGCTATGTCATCACTCCAAAATGACCGAGACCGACTACTGAA
GGAGTTGAAGAATCTGCAGCAGCAATACTTACAGATTAACCAAGAAATCGGGTGAGCTGC
GTCCACTGAAGGCTCAACTTCAGGAGTATCAAGATAAGACAAAAACATTTCAGATTATGC
AAGAAGAGCTCAGGCAGGAAAACCTCTCTTGGCAGCATGAGCTGCATCAGCTCAGGATGG
AGAAGAGTTCTTGGGAAATGCATGAGAGGAGAATGAAGGAGCAGTACCTTATGGCTATTG
CAGATAAAGATCAGCAGCTCAGCCATCTGCAGAATCTTATGAGGGAACTGAGATCTTCTT
CGTCCCAGACTGAGACCCTCAAAGTGCAATACCAAAGACAAGTATCCCCAGAGACATCCA
CTTCCCTAGATGGATCACAAAACCTAGTGTATGAGACAGAACGTCTTAGGACTCAGCTCA
ATGACAGCTTAAAGGAAATTCACCAGAAGGAGTTGAGAATTCAGCAACTCAACAGCAAGT
TCTCTCAACTGCTGGAGGAGAAAAGTACCCTTTCCATTCAGCTCTGTGACACCGGTCAGA
GTCTCCGTGAGAACCAACAGCACTATAGCAACCTTTTCAATCACTGTGCACTCCTGGAGA
AGCAGGTTCAAGAGCTGCAGGCGGTGAATGAGAAGGGGCCACCAAATATAGATGTTGCTC
CAGGAGCTCCCCAGGAAAAGAATGGAGCTCACAGGAAGGGTGATGCTGAGGAACTGAGGG
AGCCACAGATAAGCTTTTCTGAAGCCCAGCAGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGAAGTTGCTTGCGGTCACCAAAGAAAATAAAGATCTCACAGCACAAATCCAGTCTTT
CGGGAAGTCAATGAGTTCCCTGCAAAATAGTAGAGATCACGCAAATGAGGAGCTTGAAGG
CCTGAAAAGGAAATATGAGGCCAGTCTGAAGGAGCTGGCACAGCTGAGAGAAGAACAGGG
CCTCTCAGGCAGGGAGAGAGAGGTTCTTGTTTCTAAAGCTGCATTTCCGGTGCACTCCAC
TGGGGATGACAGCTCACCCCACCTTGAGAAACTTAACCAGCAGCTTCTTTCCAAAGATGA
GCAATTGCTTCACTTGTCCTCACAGCTAGAAGATTCTTACAACCAAGTGCAGTCCTTTTC
CAGGGCTATGGCCAGTCTGCAGAACGAGAGAGATCGCCTGCTGAATGAACTGGAGAAATT
CCGCAAGACAGAGGAAGGGAAGCAGAGGTCTGCAGCCCCAACCACAACCAGCCCAGCTGA
AGTACAGAGTTTAAAAAAAGCTATGTCATCACTCCAAAATGACCGAGACCGACTACTGAA
GGAGTTGAAGAATCTGCAGCAGCAATACTTACAGATTAACCAAGAAATCGGGTGAGCTGC
GTCCACTGAAGGCTCAACTTCAGGAGTATCAAGATAAGACAAAAACATTTCAGATTATGC
AAGAAGAGCTCAGGCAGGAAAACCTCTCTTGGCAGCATGAGCTGCATCAGCTCAGGATGG
AGAAGAGTTCTTGGGAAATGCATGAGAGGAGAATGAAGGAGCAGTACCTTATGGCTATTG
CAGATAAAGATCAGCAGCTCAGCCATCTGCAGAATCTTATGAGGGAACTGAGATCTTCTT
CGTCCCAGACTGAGACCCTCAAAGTGCAATACCAAAGACAAGTATCCCCAGAGACATCCA
CTTCCCTAGATGGATCACAAAACCTAGTGTATGAGACAGAACGTCTTAGGACTCAGCTCA
ATGACAGCTTAAAGGAAATTCACCAGAAGGAGTTGAGAATTCAGCAACTCAACAGCAAGT
TCTCTCAACTGCTGGAGGAGAAAAGTACCCTTTCCATTCAGCTCTGTGACACCGGTCAGA
GTCTCCGTGAGAACCAACAGCACTATAGCAACCTTTTCAATCACTGTGCACTCCTGGAGA
AGCAGGTTCAAGAGCTGCAGGCGGTGAATGAGAAGGGGCCACCAAATATAGATGTTGCTC
CAGGAGCTCCCCAGGAAAAGAATGGAGCTCACAGGAAGGGTGATGCTGAGGAACTGAGGG
AGCCACAGATAAGCTTTTCTGAAGCCCAGCAGCAGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               40-239, - strand, RNAz p=0.873321
               

               
               400-516, - strand, RNAz p=0.880291

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-239, - strand, RNAz p=0.873321
               

               
               400-516, - strand, RNAz p=0.880291

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-539, gnl|bosTau2|chr1 (40627916-40627381)
               

               
               1-539, gnl|Hg17|chr3 (122892738-122892203)
               

               
               1-539, gnl|Mm7|chr16 (36627647-36628179)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-539, gnl|bosTau2|chr1 (40627916-40627381)
               

               
               1-539, gnl|Hg17|chr3 (122892738-122892203)
               

               
               1-539, gnl|Mm7|chr16 (36627647-36628179)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.20816)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               ute (0.132784)

	40-239, - strand, RNAz p=0.873321
	400-516, - strand, RNAz p=0.880291

	1-539, gnl\|bosTau2\|chr1 (40627916-40627381)
	1-539, gnl\|Hg17\|chr3 (122892738-122892203)
	1-539, gnl\|Mm7\|chr16 (36627647-36628179)